DRSC/TRiP Functional Genomics Resources

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Protein Alignment Golgin104 and SRRM5

DIOPT Version :9

Sequence 1:NP_648879.1 Gene:Golgin104 / 39810 FlyBaseID:FBgn0036614 Length:776 Species:Drosophila melanogaster
Sequence 2:NP_001139113.1 Gene:SRRM5 / 100170229 HGNCID:37248 Length:715 Species:Homo sapiens


Alignment Length:202 Identity:39/202 - (19%)
Similarity:79/202 - (39%) Gaps:45/202 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 QAQEKVKELQQTPSQPPQNDILSHVHCLAQLEEQRR----NYEQQLEQLRTSNVQKDNMITLIQR 158
            ::..|.::..::.|...:.| .|.:...::..:.||    :.|:|..|.|:|:.::|:      |
Human   465 RSPNKARDRSRSRSPSKERD-HSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDH------R 522

  Fly   159 ENAILGKEKQACRKEMEMANKEKEATVIKFAMKEKLLIDAKKEKEAVEKQLAEAKKEVKNVSTRF 223
            .:....||:|  |::....|||::.:..:         ...:|:|  .:|.....||  ....|:
Human   523 RSRSPSKERQ--RRQSRSPNKERDRSQSR---------SPSEERE--HRQSRSPSKE--RDRRRW 572

  Fly   224 LAVSEEKSRMTYIIDEKCNEVRKYQRECEKYKTEMGHLESKLKYHINKLNIETEAKAVVERKLEE 288
            .:.|:|:.|                |:......|..|..|:..   ||.:..:..:|..:.|...
Human   573 RSPSKERER----------------RQSRSSSEERDHSRSRSP---NKQSGYSRPRASSKEKAHS 618

  Fly   289 EKNAPNK 295
            ....|:|
Human   619 RSRTPSK 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin104NP_648879.1 LMBR1 <328..>430 CDD:282625
SRRM5NP_001139113.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..715 39/202 (19%)
PHA03328 498..>554 CDD:223046 16/72 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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