DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4998 and Sp212

DIOPT Version :9

Sequence 1:NP_001036609.1 Gene:CG4998 / 39808 FlyBaseID:FBgn0036612 Length:1185 Species:Drosophila melanogaster
Sequence 2:NP_996209.2 Gene:Sp212 / 2768666 FlyBaseID:FBgn0053329 Length:516 Species:Drosophila melanogaster


Alignment Length:471 Identity:109/471 - (23%)
Similarity:169/471 - (35%) Gaps:155/471 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   786 ESSPYESSFNSIYPGSSPDFGGYGEYSQHVERSANVSGGDTDRPSN----SGRRGKQLNLGPLYN 846
            |..|..|.||..|                   ..::||.....||:    ..|.|..:|:..:: 
  Fly   121 EYRPPNSFFNRFY-------------------ELDISGSLASFPSSVFNPFTRDGLDVNVQTVF- 165

  Fly   847 IPTPAPGEAAGSDRITFPRDRRRRSVEDGVWAG-----------------AAPKEQRAYYGNRPV 894
                .|..:.|:|                :|.|                 .||.....:: |:||
  Fly   166 ----YPTSSRGND----------------IWRGFTQPWTTVSNRSPAVVTPAPTPTEIFW-NQPV 209

  Fly   895 EK----------TCRINEVCCRRPLRP-------------QAPPQQFGR--------CGVRNAAG 928
            ..          |...:......|..|             ..|||:|..        ||...:. 
  Fly   210 PSVPITFAPPVPTITSSPAPAPPPPPPLPTPPAVVTVPPATPPPQRFDPRSQISSVVCGREGST- 273

  Fly   929 ITGRIKNPVYVDGDSEF--GEYPWHVAILKKDPKESIYACGGTLIDAQHIISAAHCIKSQNGFDL 991
                  .|..|.| :||  |:|||..|:..|:.:...:.|.|:||.:..:||||||:.......:
  Fly   274 ------TPFIVRG-NEFPRGQYPWLSAVYHKEVRALAFKCRGSLISSSIVISAAHCVHRMTEDRV 331

  Fly   992 RVRLGEWDVNHDVEFFPYIE-----RDVVSVHIHPEYYAGTL-DNDLAVLKLDQPVDFTKNPHIS 1050
            .|.||.:|::      .|.|     |:|:.:..||:|...:. |.|:|::.:::||.|  |..|:
  Fly   332 VVGLGRYDLD------DYGEDGAEMRNVMRLLWHPDYNTRSYSDADIALITIERPVTF--NDIIA 388

  Fly  1051 PACLPDKYSDFTGARCWT-------------TGWGKDAFGEHGKYQNILKEVDVPILSHQQCESQ 1102
            |.|:            ||             .|||:|......:|..:   |:..|.|...|.|.
  Fly   389 PICM------------WTVEASRTVSTTGFIAGWGRDEDSSRTQYPRV---VEAEIASPTVCAST 438

  Fly  1103 LRNTRLGYSYKLNPGFVCAGGEEGKDACKGDGGGPLVCDRNGAMHVVGVVSWG----IGCGQVNV 1163
            .|.|      .:....:|||..:|...|.||.||.|:..:.....:.|:||.|    .|..|:|.
  Fly   439 WRGT------MVTERSLCAGNRDGSGPCVGDSGGGLMVKQGDRWLLRGIVSAGERGPAGTCQLNQ 497

  Fly  1164 PGVYVKVSAYLPWIQQ 1179
            ..:|..:|.::.||.:
  Fly   498 YVLYCDLSKHINWISE 513

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG4998NP_001036609.1 Tryp_SPc 942..1180 CDD:238113 74/263 (28%)
Tryp_SPc 942..1177 CDD:214473 72/259 (28%)