DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13040 and CG13063

DIOPT Version :9

Sequence 1:NP_001261936.1 Gene:CG13040 / 39804 FlyBaseID:FBgn0036608 Length:185 Species:Drosophila melanogaster
Sequence 2:NP_648869.1 Gene:CG13063 / 39797 FlyBaseID:FBgn0036601 Length:129 Species:Drosophila melanogaster


Alignment Length:154 Identity:55/154 - (35%)
Similarity:71/154 - (46%) Gaps:45/154 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFRFIAICALATIVAAAPGFIEEHP-VAVAPV---------VAKVGAVVHSAPLATSHQSFTQYH 55
            ||:.:.:.||..:..|.||.:.|.| |..||.         :||||:||.|.|.:.||||.:..|
  Fly     1 MFKLVVLSALLAVAVARPGHLYESPLVYAAPAATTVVQERSLAKVGSVVSSIPTSVSHQSQSVVH 65

  Fly    56 NQAVLTPVVKHVVPAVPVIKTVAPVV---PVVKHVAPIVPVVKQVAPIVPVVKHVAPVVPVIKTV 117
            :.:       |||..:     |||||   |||.:.|        .||:|......||||      
  Fly    66 SHS-------HVVEDI-----VAPVVKSTPVVSYAA--------AAPVVHTAYAAAPVV------ 104

  Fly   118 PVVHHQTYVAPAVH--HVAAVPVV 139
                |.:|.||.||  :.||.|||
  Fly   105 ----HTSYAAPVVHTSYAAASPVV 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13040NP_001261936.1 Retinin_C <40..94 CDD:282395 19/56 (34%)
CG13063NP_648869.1 rne <11..124 CDD:236766 49/142 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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