DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13040 and CG13044

DIOPT Version :9

Sequence 1:NP_001261936.1 Gene:CG13040 / 39804 FlyBaseID:FBgn0036608 Length:185 Species:Drosophila melanogaster
Sequence 2:NP_648867.1 Gene:CG13044 / 39795 FlyBaseID:FBgn0036599 Length:155 Species:Drosophila melanogaster


Alignment Length:158 Identity:61/158 - (38%)
Similarity:81/158 - (51%) Gaps:39/158 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFRFIAICALATIVAAAPGFIEEHP----------VAVAPVVAKVGAVVHSAPLATSHQSFTQYH 55
            ||:...:.||..:.||.||.:...|          |...||:|||||||.|.|.|.||||.||.|
  Fly     1 MFKLFVLAALLAVAAAKPGHLAAAPLVYSAPATTTVVQEPVLAKVGAVVKSVPTAVSHQSLTQVH 65

  Fly    56 NQAVLTPVVKHVVPAVPVIKTVAPVVPVVKHVAPIV---PVVKQVAPI---VPVVKHVAPV---- 110
            :    ||||:.||  .||:||.|      .|.||::   |:||.:||:   .|:. :.|||    
  Fly    66 S----TPVVEDVV--APVVKTTA------VHSAPVLAAAPIVKTLAPVAYSAPLA-YSAPVAYSS 117

  Fly   111 --VPVIKTVPVVHHQ--TYVAPA--VHH 132
              .|:..:.||.:..  :|.|||  :||
  Fly   118 YAAPLTYSAPVAYSAPLSYAAPAPLLHH 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13040NP_001261936.1 Retinin_C <40..94 CDD:282395 25/56 (45%)
CG13044NP_648867.1 Retinin_C 36..93 CDD:282395 34/68 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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