DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13041 and CG13062

DIOPT Version :9

Sequence 1:NP_648872.1 Gene:CG13041 / 39801 FlyBaseID:FBgn0036605 Length:124 Species:Drosophila melanogaster
Sequence 2:NP_648871.3 Gene:CG13062 / 39799 FlyBaseID:FBgn0036603 Length:118 Species:Drosophila melanogaster


Alignment Length:134 Identity:40/134 - (29%)
Similarity:60/134 - (44%) Gaps:36/134 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFKFVAVIALLVATASA--GLIETHH-----VVHEPVLAKVGSVVHSAPSAVSHQSITQVHS--K 56
            |.|.|..:..:.|..:|  |.:..||     :.:.|....|..:.:..|:||||||.|.|||  .
  Fly     1 MMKLVVSLLSICALTAARPGFLHGHHHHYPEIPYYPHHHHVEPLHYHLPAAVSHQSSTVVHSVPH 65

  Fly    57 AVVQPVVAP-IVKTTTYSHPAVAVHAAPVVHSVPVVHAAPVVHSVPLVHSAPLVKSVVHSAPLAY 120
            .:::||:.| :|||              |||. |::.|         .|.||::|:.....|  :
  Fly    66 HIIKPVLLPTVVKT--------------VVHP-PIIKA---------YHPAPIIKAYHPYDP--F 104

  Fly   121 TLHH 124
            .|||
  Fly   105 HLHH 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13041NP_648872.1 Retinin_C 25..>73 CDD:282395 19/50 (38%)
CG13062NP_648871.3 Retinin_C 32..95 CDD:282395 27/86 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.