DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13041 and CG13043

DIOPT Version :9

Sequence 1:NP_648872.1 Gene:CG13041 / 39801 FlyBaseID:FBgn0036605 Length:124 Species:Drosophila melanogaster
Sequence 2:NP_648868.2 Gene:CG13043 / 39796 FlyBaseID:FBgn0036600 Length:148 Species:Drosophila melanogaster


Alignment Length:148 Identity:70/148 - (47%)
Similarity:88/148 - (59%) Gaps:32/148 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFKFVAVIALL-VATASAG-LIETH----------HVVHEPVLAKVGSVVHSAPSAVSHQSITQV 53
            |||.|.:.||| ||.|..| |:|:.          .:|.||||||||:||.|.|:||||||.:.|
  Fly     1 MFKLVVLSALLAVAAARPGHLLESSPLVYAAPAATTIVQEPVLAKVGAVVKSVPTAVSHQSQSVV 65

  Fly    54 HSKA-VVQPVVAPIVKTTTYSHPAVA-VHAAPVVH----SVPVVHA-----APVVHSVPLVHSAP 107
            ||.| ||:.||||:||:|    |.|: ..||||||    :.||||.     |||||: ....:||
  Fly    66 HSHAHVVEDVVAPVVKST----PVVSYAAAAPVVHTSYAAAPVVHTSYAAPAPVVHT-SYAAAAP 125

  Fly   108 LVKS----VVHSAPLAYT 121
            ::.:    |..|:||.||
  Fly   126 VLATSYAQVAASSPLTYT 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13041NP_648872.1 Retinin_C 25..>73 CDD:282395 32/48 (67%)
CG13043NP_648868.2 Retinin_C 37..105 CDD:282395 41/71 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I16588
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.010

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