DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13042 and CG4982

DIOPT Version :9

Sequence 1:NP_648870.1 Gene:CG13042 / 39798 FlyBaseID:FBgn0036602 Length:117 Species:Drosophila melanogaster
Sequence 2:NP_648866.1 Gene:CG4982 / 39794 FlyBaseID:FBgn0036598 Length:113 Species:Drosophila melanogaster


Alignment Length:119 Identity:41/119 - (34%)
Similarity:57/119 - (47%) Gaps:29/119 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYKLVVF----FALLAVVAARPGYLESGPLLHSYAAPAIIHEPALAKVGAIIKTVPSAVSHQSIS 61
            |:|:|..    ||:|  :.|||.||.|  ..|...||:::...:.|        :|:||||||.:
  Fly     1 MFKVVFLLCGVFAVL--IQARPSYLPS--YEHVEYAPSVVGYESYA--------LPAAVSHQSST 53

  Fly    62 QVHSSAHIIQPIVAPVVKTYAAPIIKTYAAPALHTTLLSSPWAGHGWAGH--GW 113
            .||......:|||.      ..||:|...|||     .|..:|..|:||:  ||
  Fly    54 VVHEKRPYWRPIVD------HTPILKAAYAPA-----TSISYAPLGYAGNSAGW 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13042NP_648870.1 Retinin_C 35..93 CDD:309599 17/57 (30%)
CG4982NP_648866.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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