DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13044 and CG4962

DIOPT Version :9

Sequence 1:NP_648867.1 Gene:CG13044 / 39795 FlyBaseID:FBgn0036599 Length:155 Species:Drosophila melanogaster
Sequence 2:NP_648865.1 Gene:CG4962 / 39793 FlyBaseID:FBgn0036597 Length:123 Species:Drosophila melanogaster


Alignment Length:151 Identity:41/151 - (27%)
Similarity:58/151 - (38%) Gaps:51/151 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFKLFVL-AALLAVAAA---KP-------GHLAAAPLVYSAPATTTVVQEPVLAKVGAVVKSVPT 54
            ||||..| :||.|||.|   .|       |:.||....|:|||                      
  Fly     1 MFKLIALISALCAVANAGVISPYSHGYGLGYGAALAPAYAAPA---------------------- 43

  Fly    55 AVSHQSLTQVHSTPVVEDVVAPVVKTT---AVHSAPVLAAAPIVKTLAPVAYSAPLAYSAPVAYS 116
            .:||..:.:.::.|:|...||.....|   |..:.||:.|||:|       ::.|..:|....:.
  Fly    44 VISHAPIIKSYAAPIVAHPVATSYANTYKVATKAIPVVHAAPLV-------HAVPALHSTSTYHG 101

  Fly   117 SYAAPLTYSAPVAYSAPLSYA 137
            ||....:|.        |.||
  Fly   102 SYGGYGSYG--------LGYA 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13044NP_648867.1 Retinin_C 36..93 CDD:282395 11/59 (19%)
CG4962NP_648865.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.