DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4982 and retinin

DIOPT Version :9

Sequence 1:NP_648866.1 Gene:CG4982 / 39794 FlyBaseID:FBgn0036598 Length:113 Species:Drosophila melanogaster
Sequence 2:NP_524995.2 Gene:retinin / 53564 FlyBaseID:FBgn0040074 Length:191 Species:Drosophila melanogaster


Alignment Length:83 Identity:28/83 - (33%)
Similarity:37/83 - (44%) Gaps:18/83 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EYAPSVVGYESYALPAAVSHQSSTVVHEKRPYWRPIVDHTPILKAAYAPATSISYAPLGYAGNSA 94
            |.|.:.||.....:|.|||||:.||||:.|   |.:   |||:..|......|...|        
  Fly   124 EPAVAKVGEVVQHVPTAVSHQTQTVVHDHR---RLV---TPIVAPAVRTTQVIRQQP-------- 174

  Fly    95 GWYEPGIWGVSSYPSIYL 112
                |.:|.|:|.|.:.|
  Fly   175 ----PLLWSVASDPRVVL 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4982NP_648866.1 None
retininNP_524995.2 Retinin_C 122..>169 CDD:309599 20/50 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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