DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and RLP11

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_001321997.1 Gene:RLP11 / 843480 AraportID:AT1G71390 Length:789 Species:Arabidopsis thaliana


Alignment Length:498 Identity:121/498 - (24%)
Similarity:180/498 - (36%) Gaps:149/498 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 MKFYESTLLYMPFHLFE--TFPYLKTLDVSNTNIL---ELTRNAFSAASNLTYLNLAYNNLTSIQ 134
            :||.:.      |.:||  :.|:.||.|..:.:.:   :.:....|.....|.||      :|::
plant    46 LKFRDE------FPIFESKSSPWNKTTDCCSWDGVTCDDKSGQVISLDLRSTLLN------SSLK 98

  Fly   135 T-SVFIGANVLMRLDLS----YNEISS------------LSVNAFCGLHTISQI-YLTGNLLKEL 181
            | |.......|..||||    :.||.|            ||.|...|     :| |..|| ||:|
plant    99 TNSSLFRLQYLRHLDLSGCNLHGEIPSSLGNLSRLENLELSSNRLVG-----EIPYSIGN-LKQL 157

  Fly   182 HNDIFKDNEYLEKV-SFEGNL------------LTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDT 233
            .|....||:.:.:: |..|||            |....|....|:..::.::|..|.|....|.:
plant   158 RNLSLGDNDLIGEIPSSLGNLSLLLDLDLWNNSLVGEVPASIGNLNELRVMSLDRNSLSGSIPIS 222

  Fly   234 FADAASLENLVLSYN-------ELKNFQLTEKNIVHQLHLDNNYLTN------LTINATRFVRAS 285
            |.:...|....:.:|       :|..|.    |:| ...:..|..:.      .:|.:..:|...
plant   223 FTNLTKLSEFRIFFNNFTSLPSDLSGFH----NLV-TFDISANSFSGHFPKFLFSIPSLAWVSMD 282

  Fly   286 HNQISELF----LHQSLHIETLDLSANKL--SSISNITNITHMLYLDVSDNPI-GP--------- 334
            .||.|...    :..|..::.|.|:.|||  |...:|:...:::.|||:.|.| ||         
plant   283 RNQFSGPIEFANISSSSKLQNLILTRNKLDGSIPESISKFLNLVLLDVAHNNISGPVPRSMSKLV 347

  Fly   335 -LNISTFSQLKRLRG------LNLRGTGIRELKFGMF----SKQKYLEELDLSFNNLTILNLDMF 388
             |.|..||. .:|.|      ..|..|.:....|..|    ||:..::.||||||:..    ..|
plant   348 SLRIFGFSN-NKLEGEVPSWLWRLSSTMLSHNSFSSFEKIYSKETMIQVLDLSFNSFR----GTF 407

  Fly   389 VPYLTNLK--KFLIDGNGLTE---------------LQGNRTFSEAFP-------QLQKLGVSRN 429
            ..::..||  .||...|.|..               :.||..||...|       .||.|.||.|
plant   408 PVWICKLKGLHFLDLSNNLFNGSIPLCLRNFNLTGLILGNNKFSGTLPDIFANNTNLQSLDVSGN 472

  Fly   430 R---------FNCSYLHHLLIPPSLPESVVLNIEPDTNLDETP 463
            :         .||..||            .:|:|.:...|..|
plant   473 QLEGKFPKSLINCKGLH------------FVNVESNKIKDTFP 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 4/25 (16%)
LRR_8 118..178 CDD:290566 22/77 (29%)
leucine-rich repeat 120..143 CDD:275380 6/23 (26%)
leucine-rich repeat 144..167 CDD:275380 12/38 (32%)
leucine-rich repeat 168..191 CDD:275380 10/23 (43%)
LRR_8 192..250 CDD:290566 14/77 (18%)
leucine-rich repeat 192..215 CDD:275380 7/35 (20%)
LRR_RI <207..432 CDD:238064 70/297 (24%)
leucine-rich repeat 216..239 CDD:275380 5/22 (23%)
leucine-rich repeat 240..299 CDD:275380 13/75 (17%)
LRR_8 299..356 CDD:290566 22/75 (29%)
leucine-rich repeat 300..321 CDD:275380 7/22 (32%)
leucine-rich repeat 322..345 CDD:275380 11/33 (33%)
LRR_8 344..405 CDD:290566 20/72 (28%)
leucine-rich repeat 346..365 CDD:275380 6/28 (21%)
leucine-rich repeat 370..394 CDD:275380 7/23 (30%)
leucine-rich repeat 395..420 CDD:275380 11/48 (23%)
RLP11NP_001321997.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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