DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and AT1G68780

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_564942.1 Gene:AT1G68780 / 843209 AraportID:AT1G68780 Length:432 Species:Arabidopsis thaliana


Alignment Length:449 Identity:109/449 - (24%)
Similarity:175/449 - (38%) Gaps:124/449 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 CDEYDSMGYMDVNEAFCTVTGFTVTHSQNVVIKNIPPGNMVKFMKFYESTLLYMPFHLFETFPYL 96
            ||.||.:.|:.. .:|.|:...::..|::.||:.                      .||| ..:|
plant    78 CDIYDELWYVTA-LSFGTMKDNSLACSESPVIRP----------------------QLFE-LKHL 118

  Fly    97 KTLDVSNTNILELTRNAFSAA-SNLTYLNLAYNNLTSIQTSVFIGANVLMRLDLSYN-----EIS 155
            |:|.:.|   ...|.|.:.|: |:..:|:|:.:               |.||::..|     |:.
plant   119 KSLSLFN---CFTTPNRYLASISDEKWLDLSKS---------------LERLEIRSNPGLIGELP 165

  Fly   156 SLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEGNLLTSIQPEVFRNMRRIKEVN 220
            |:..|.   .:..|.:.|...|...|..::.|... |.::...||..|...|||: .:..:..::
plant   166 SVITNL---TNLQSLVVLENKLTGPLPVNLAKLTR-LRRLVLSGNRFTGRIPEVY-GLTGLLILD 225

  Fly   221 LSNNRLIFIHPDTFADAASLENLVLSYNELKNFQLTEKNIVHQLHLDNNYLTNLTINATRFVRAS 285
            :|.|.|....|.:.....||..|.||.|.|:.          :|..:...|.|||:         
plant   226 VSRNFLSGALPLSVGGLYSLLKLDLSNNYLEG----------KLPRELESLKNLTL--------- 271

  Fly   286 HNQISELFLHQSLHIETLDLSANKLSS--ISNITNITHMLYLDVSDNPI-GPLNISTFSQLKRLR 347
                             |||..|:||.  ...|..:|.::.|.:|:|.: |.|....:..||.|.
plant   272 -----------------LDLRNNRLSGGLSKEIQEMTSLVELVLSNNRLAGDLTGIKWRNLKNLV 319

  Fly   348 GLNLRGTGIRELKFGMFSKQKYLEELDLSFNNL---TILNLDMFVPYLTNLKKFLIDGNGLT-EL 408
            .|:|..||::....|...:.|.|..|.||.|||   .|..::..:|.|:.|   .::||.:: ||
plant   320 VLDLSNTGLKGEIPGSILELKKLRFLGLSNNNLGGKLIPQMETEMPSLSAL---YVNGNNISGEL 381

  Fly   409 QGNRTFSEAFPQLQKLGVSRNRFNCSYLHHLLIPPSLPESVVLNIEPDTNLDETPHIRD 467
            :.:|.|.|...  ::|||..|. |..|                      |.|||.::.|
plant   382 EFSRYFYERMG--RRLGVWGNP-NLCY----------------------NGDETKNLSD 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 7/23 (30%)
LRR_8 118..178 CDD:290566 12/64 (19%)
leucine-rich repeat 120..143 CDD:275380 2/22 (9%)
leucine-rich repeat 144..167 CDD:275380 7/27 (26%)
leucine-rich repeat 168..191 CDD:275380 5/22 (23%)
LRR_8 192..250 CDD:290566 17/57 (30%)
leucine-rich repeat 192..215 CDD:275380 7/22 (32%)
LRR_RI <207..432 CDD:238064 63/231 (27%)
leucine-rich repeat 216..239 CDD:275380 4/22 (18%)
leucine-rich repeat 240..299 CDD:275380 11/58 (19%)
LRR_8 299..356 CDD:290566 19/59 (32%)
leucine-rich repeat 300..321 CDD:275380 7/22 (32%)
leucine-rich repeat 322..345 CDD:275380 6/23 (26%)
LRR_8 344..405 CDD:290566 21/63 (33%)
leucine-rich repeat 346..365 CDD:275380 6/18 (33%)
leucine-rich repeat 370..394 CDD:275380 10/26 (38%)
leucine-rich repeat 395..420 CDD:275380 8/25 (32%)
AT1G68780NP_564942.1 PLN00113 <108..>381 CDD:215061 84/357 (24%)
leucine-rich repeat 118..148 CDD:275380 10/32 (31%)
leucine-rich repeat 149..173 CDD:275380 7/26 (27%)
leucine-rich repeat 174..197 CDD:275380 5/22 (23%)
leucine-rich repeat 198..220 CDD:275380 7/22 (32%)
leucine-rich repeat 221..244 CDD:275380 4/22 (18%)
leucine-rich repeat 245..268 CDD:275380 8/32 (25%)
leucine-rich repeat 269..292 CDD:275380 9/48 (19%)
leucine-rich repeat 293..317 CDD:275380 6/23 (26%)
leucine-rich repeat 318..341 CDD:275380 6/22 (27%)
leucine-rich repeat 342..366 CDD:275380 8/23 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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