DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4950 and RLP37

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_188952.1 Gene:RLP37 / 821886 AraportID:AT3G23110 Length:835 Species:Arabidopsis thaliana


Alignment Length:784 Identity:158/784 - (20%)
Similarity:274/784 - (34%) Gaps:277/784 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NRTRRILEVIVIL-----ILAISSCDGSGGDIPLRCDEYDSMGYMDVNEAF-------------- 47
            |::|..|.:|:.:     :|::.:...|......|.|:.|::  :::.:.|              
plant     4 NQSRCFLGIIITISFFFFLLSLPNTFASPTRSLCRSDQRDAL--LELKKEFPIHSNGSHHVTTLS 66

  Fly    48 -------CTVTGFTVTHSQNVVIKNIPPGNMVKFMKFYESTLLYMPFHLFETFPYLKTLDVSNTN 105
                   |:..|.|...:...||.       :..:.:..:|.|.....||: ..:|:.|::|:.|
plant    67 WNKTVDCCSWEGVTCDATLGEVIS-------LNLVSYIANTSLKSSSSLFK-LRHLRHLELSHCN 123

  Fly   106 ILELTRNAFSAASNLTYLNLAYNNLTSIQTSVFIG-ANVLMRLDLSYNEISSLSVNAFCGLHTIS 169
            :.....::....|:||||:|::|.|.. :..|.|| .|.|..:||..|.:......:|..|..:|
plant   124 LQGEIPSSIGNLSHLTYLDLSFNQLVG-EFPVSIGNLNQLEYIDLWVNALGGNIPTSFANLTKLS 187

  Fly   170 QIYL-----TG------NL--------------------LKELHN-------------------- 183
            :::|     ||      ||                    |.:|||                    
plant   188 ELHLRQNQFTGGDIVLSNLTSLSIVDLSSNYFNSTISADLSQLHNLERFWVSENSFFGPFPSFLL 252

  Fly   184 ------DI-FKDNEYLEKVSFEGNLLTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDTFADAASLE 241
                  || ..:|::...::| ||..:|         .::.|:::|.|.|..:.|.:.:...|||
plant   253 MIPSLVDICLSENQFEGPINF-GNTTSS---------SKLTELDVSYNNLDGLIPKSISTLVSLE 307

  Fly   242 NLVLSYNELKNFQ-LTEKNIVHQLHLDNNYLTNLTINATRFVRASHNQI-----SELFLHQSLHI 300
            :|.||:|   ||: ....:|...::||..||             |||..     |.:|  :.:::
plant   308 HLELSHN---NFRGQVPSSISKLVNLDGLYL-------------SHNNFGGQVPSSIF--KLVNL 354

  Fly   301 ETLDLSANKL-----SSISNITNIT-------------------------------------HML 323
            |.||||.|..     ||||.:.|::                                     .:|
plant   355 EHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHVPQCIWRSSKLDSVDLSYNSFNSFGRIL 419

  Fly   324 YL---------DVSDNPI-GPL-----NISTFSQL----KRLRG--------------LNLRGTG 355
            .|         |:|.|.: ||:     |...||.|    ..|.|              ||||...
plant   420 ELGDESLERDWDLSSNSLQGPIPQWICNFRFFSFLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNS 484

  Fly   356 IRELKFGMFSKQKYLEELDLSFNNL------TILNLDMFVPYLTNLKKFLIDGNGLTE------- 407
            :.............|..||:|.|||      :.:|.: ::.||.      :.||.:.:       
plant   485 LSGFMPDFCMDGSMLGSLDVSLNNLVGKLPESFINCE-WMEYLN------VRGNKIKDTFPVWLG 542

  Fly   408 ---------LQGNRTFSE--------AFPQLQKLGVSRNRFNCSYLHHLLIPPSLPESVVLNIEP 455
                     |:.|..:..        .||.::.:.:|.|.|          ..|||:....|...
plant   543 SLQYLTVLVLRSNTFYGPVYKASAYLGFPSMRIMDISNNNF----------VGSLPQDYFANWTE 597

  Fly   456 DTNLDETPHI-----RDVSCISQS-------QEVVNASFTAEESKLESQIQMLSKQLDIVGS--- 505
            .:::.:.|.:     |:::....:       |:.::..:...::..| ||....|.:|..|:   
plant   598 MSSVWQRPMLTLDYKRNIAIPGSNYMGDDNHQDSIDLVYKGVDTDFE-QIFGGFKVIDFSGNRFS 661

  Fly   506 ----HSKNLELHLAFMQIFAYVMGGLV---LVGVVSLITLRYLKNQRSGRYDR--SSIVFRSNAT 561
                .|..|...|..:.:......|.:   |..:..|.||...:|..||...|  ..:.|.||..
plant   662 GHIPRSIGLLSELLHLNLSGNAFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSNIN 726

  Fly   562 MEAN 565
            ...|
plant   727 FSHN 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 4/22 (18%)
LRR_8 118..178 CDD:290566 24/91 (26%)
leucine-rich repeat 120..143 CDD:275380 10/23 (43%)
leucine-rich repeat 144..167 CDD:275380 6/22 (27%)
leucine-rich repeat 168..191 CDD:275380 13/80 (16%)
LRR_8 192..250 CDD:290566 16/57 (28%)
leucine-rich repeat 192..215 CDD:275380 4/22 (18%)
LRR_RI <207..432 CDD:238064 70/335 (21%)
leucine-rich repeat 216..239 CDD:275380 5/22 (23%)
leucine-rich repeat 240..299 CDD:275380 18/64 (28%)
LRR_8 299..356 CDD:290566 28/131 (21%)
leucine-rich repeat 300..321 CDD:275380 11/62 (18%)
leucine-rich repeat 322..345 CDD:275380 11/41 (27%)
LRR_8 344..405 CDD:290566 18/80 (23%)
leucine-rich repeat 346..365 CDD:275380 6/32 (19%)
leucine-rich repeat 370..394 CDD:275380 10/29 (34%)
leucine-rich repeat 395..420 CDD:275380 5/48 (10%)
RLP37NP_188952.1 LRRNT_2 39..82 CDD:311940 6/44 (14%)
PLN00113 66..>764 CDD:331614 148/720 (21%)
leucine-rich repeat 114..137 CDD:275380 4/22 (18%)
leucine-rich repeat 138..161 CDD:275380 10/23 (43%)
leucine-rich repeat 162..185 CDD:275380 6/22 (27%)
leucine-rich repeat 186..208 CDD:275380 6/21 (29%)
leucine-rich repeat 209..281 CDD:275380 11/81 (14%)
leucine-rich repeat 257..278 CDD:275380 6/21 (29%)
leucine-rich repeat 282..305 CDD:275380 5/22 (23%)
leucine-rich repeat 306..329 CDD:275380 9/25 (36%)
leucine-rich repeat 330..353 CDD:275380 9/37 (24%)
leucine-rich repeat 354..375 CDD:275380 10/20 (50%)
leucine-rich repeat 402..420 CDD:275380 0/17 (0%)
leucine-rich repeat 421..450 CDD:275380 7/28 (25%)
leucine-rich repeat 451..474 CDD:275380 5/22 (23%)
leucine-rich repeat 475..498 CDD:275380 4/22 (18%)
leucine-rich repeat 499..520 CDD:275380 7/20 (35%)
leucine-rich repeat 523..546 CDD:275380 4/28 (14%)
leucine-rich repeat 547..572 CDD:275380 3/24 (13%)
leucine-rich repeat 573..597 CDD:275380 7/33 (21%)
leucine-rich repeat 598..649 CDD:275380 6/51 (12%)
leucine-rich repeat 651..673 CDD:275380 5/21 (24%)
leucine-rich repeat 674..697 CDD:275380 3/22 (14%)
leucine-rich repeat 698..721 CDD:275380 7/22 (32%)
leucine-rich repeat 722..755 CDD:275380 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.