DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and Lingo4

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_001102659.1 Gene:Lingo4 / 499668 RGDID:1562025 Length:618 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380
LRR_8 118..178 CDD:290566
leucine-rich repeat 120..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380
leucine-rich repeat 168..191 CDD:275380
LRR_8 192..250 CDD:290566
leucine-rich repeat 192..215 CDD:275380
LRR_RI <207..432 CDD:238064
leucine-rich repeat 216..239 CDD:275380
leucine-rich repeat 240..299 CDD:275380
LRR_8 299..356 CDD:290566
leucine-rich repeat 300..321 CDD:275380
leucine-rich repeat 322..345 CDD:275380
LRR_8 344..405 CDD:290566
leucine-rich repeat 346..365 CDD:275380
leucine-rich repeat 370..394 CDD:275380
leucine-rich repeat 395..420 CDD:275380
Lingo4NP_001102659.1 leucine-rich repeat 87..110 CDD:275380
LRR_8 88..145 CDD:290566
LRR_4 88..126 CDD:289563
LRR_RI 110..345 CDD:238064
leucine-rich repeat 111..134 CDD:275380
LRR_8 134..193 CDD:290566
leucine-rich repeat 135..158 CDD:275380
leucine-rich repeat 159..182 CDD:275380
LRR_8 182..237 CDD:290566
leucine-rich repeat 183..206 CDD:275380
leucine-rich repeat 207..230 CDD:275380
leucine-rich repeat 231..254 CDD:275380
leucine-rich repeat 255..302 CDD:275380
LRR_8 278..334 CDD:290566
leucine-rich repeat 303..326 CDD:275380
LRR_8 326..385 CDD:290566
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 351..374 CDD:275380
IG_like 445..526 CDD:214653
Ig 456..526 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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