DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and CG7702

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_650740.1 Gene:CG7702 / 42242 FlyBaseID:FBgn0038638 Length:537 Species:Drosophila melanogaster


Alignment Length:363 Identity:93/363 - (25%)
Similarity:155/363 - (42%) Gaps:84/363 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 LKTLDVSNTNILELTRNAFSAASNLTYLNLAYNNLTSIQ--TSVFIGA-NVLMRLDLSYNEISSL 157
            |:.||:|:..|:.|.|..|....:||.||||||.|:|:.  |:..||: ..|.|||||:|.:.:|
  Fly   166 LRDLDLSHNRIVRLDRRLFEHTPHLTKLNLAYNKLSSLDEATTASIGSVATLQRLDLSHNGLMTL 230

  Fly   158 SVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEGNLLTSIQPEVFRNMRRIKEVNLS 222
            ....|..|.::..:.::||....:...:....:.|.:::..||...|::....:.:..:|.:|:|
  Fly   231 PAQLFSKLTSLRFLDVSGNEFSTMPASLQLLGKSLVQLNLAGNAFLSLKENSLQGLVSLKRLNIS 295

  Fly   223 NNRLIFIHPDTFADAASLENLVLSYN-ELKNFQLTE----KNIVHQLHLDNNYLTNLTINATRFV 282
            :...:........:..:||:|..|.| :|:..:|.:    :|: .||.|..|.||.|.||||...
  Fly   296 SMPSLRSLEKGALNLPALEHLDCSRNSKLERLELADLLSSRNL-SQLDLSWNALTTLVINATGSS 359

  Fly   283 RASHNQISELF------------------LHQSL------HI-----------ETLDLSANKLSS 312
            ..|.|..:|.:                  |.::|      ||           ||..|.|.  |.
  Fly   360 NNSSNSTNETWPRLRRMSISGNPWYCSCELFKALELIGLNHIDREWDGTEARCETPYLLAG--SP 422

  Fly   313 ISNIT--NITHML----YLDVSDNP---------------------IG-PLNISTFSQLKRLRGL 349
            :||:|  .|..|:    |.:|.:.|                     || .:........:||:|.
  Fly   423 LSNLTAERICKMVIPKKYREVDEEPPRFLRRHYIILTAIIASIVLVIGLVIGFVVVCVRRRLKGS 487

  Fly   350 N-----LRGTGIRELKFGMFSKQKYLEELDLS--FNNL 380
            :     :|.|.:|......||:   |:.:.::  |||:
  Fly   488 DYGVQPIRYTSVRGSNLSQFSQ---LQPVSVASKFNNV 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 8/22 (36%)
LRR_8 118..178 CDD:290566 25/62 (40%)
leucine-rich repeat 120..143 CDD:275380 13/25 (52%)
leucine-rich repeat 144..167 CDD:275380 10/22 (45%)
leucine-rich repeat 168..191 CDD:275380 2/22 (9%)
LRR_8 192..250 CDD:290566 12/58 (21%)
leucine-rich repeat 192..215 CDD:275380 4/22 (18%)
LRR_RI <207..432 CDD:238064 56/249 (22%)
leucine-rich repeat 216..239 CDD:275380 3/22 (14%)
leucine-rich repeat 240..299 CDD:275380 24/87 (28%)
LRR_8 299..356 CDD:290566 22/100 (22%)
leucine-rich repeat 300..321 CDD:275380 10/33 (30%)
leucine-rich repeat 322..345 CDD:275380 6/48 (13%)
LRR_8 344..405 CDD:290566 12/44 (27%)
leucine-rich repeat 346..365 CDD:275380 5/23 (22%)
leucine-rich repeat 370..394 CDD:275380 4/13 (31%)
leucine-rich repeat 395..420 CDD:275380
CG7702NP_650740.1 leucine-rich repeat 110..131 CDD:275380
LRR_RI <123..267 CDD:238064 34/100 (34%)
leucine-rich repeat 132..165 CDD:275380
LRR_8 165..227 CDD:290566 28/60 (47%)
leucine-rich repeat 166..189 CDD:275380 8/22 (36%)
leucine-rich repeat 190..213 CDD:275380 12/22 (55%)
LRR_8 216..273 CDD:290566 13/56 (23%)
leucine-rich repeat 217..240 CDD:275380 10/22 (45%)
leucine-rich repeat 241..264 CDD:275380 2/22 (9%)
LRR_8 263..321 CDD:290566 11/57 (19%)
leucine-rich repeat 265..288 CDD:275380 4/22 (18%)
leucine-rich repeat 289..312 CDD:275380 3/22 (14%)
leucine-rich repeat 313..337 CDD:275380 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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