DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and Toll-6

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_001246765.1 Gene:Toll-6 / 39663 FlyBaseID:FBgn0036494 Length:1514 Species:Drosophila melanogaster


Alignment Length:503 Identity:115/503 - (22%)
Similarity:210/503 - (41%) Gaps:101/503 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 RCDEYDSMGYMDVNEAFCTVTGFTVTHSQNVVIKNIPPGNM-----VKFMKFYESTLLYMPFHLF 90
            |..:.:.:|:.|.::.  ...|.|.:.|.....|.....:.     ::::....:..:.:|.:.|
  Fly   235 RLQDVNELGFRDRSKE--PTNGSTESTSTTESAKKSSSSSTSCSLDLEYLDVSHNDFVVLPANGF 297

  Fly    91 ETFPYLKTLDVSNTNILELTRNAFSAASNLTYLNLAYNNLTSIQTSVFI-GANVLMRLDLSYNEI 154
            .|...|:.|.|:|..|..:...|.|...||..|||:.|.:.::.|.:|. .|.::..:.|..|.|
  Fly   298 GTLRRLRVLSVNNNGISMIADKALSGLKNLQILNLSSNKIVALPTELFAEQAKIIQEVYLQNNSI 362

  Fly   155 SSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEG-----------NLLTSIQPE 208
            |.|:...|..|..:..:.|:.|.:         .:.:::|.:|.|           |.||.::||
  Fly   363 SVLNPQLFSNLDQLQALDLSMNQI---------TSTWIDKNTFVGLIRLVLLNLSHNKLTKLEPE 418

  Fly   209 VFRNMRRIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNELK---NFQLTEKNIVHQLHLDNNY 270
            :|.::..::.:||.:|:|..|..||||...:|..|:||:|:||   .:.|....::..|.||||.
  Fly   419 IFSDLYTLQILNLRHNQLENIAADTFAPMNNLHTLLLSHNKLKYLDAYALNGLYVLSLLSLDNNA 483

  Fly   271 LTNLTINATRFVRASHNQISELFLHQSLHIETLDLSANKLSSIS-NITNITHMLYLDVSDNPIGP 334
            |..:..:|.|...|               ::.|:|:.|:|.::. .:.|:.|:..:|:.:|.|..
  Fly   484 LIGVHPDAFRNCSA---------------LQDLNLNGNQLKTVPLALRNMRHLRTVDLGENMITV 533

  Fly   335 LNISTFSQLKRLRGLNLRGTGIRELKFGMFSKQKYLEELDLSFNNLTILNLDMFVPYLTNLKKFL 399
            :..|.|..|..|.||.|.|..:..:....|.....|:.|:|:.|.:.::....| ...::::...
  Fly   534 MEDSAFKGLGNLYGLRLIGNYLENITMHTFRDLPNLQILNLARNRIAVVEPGAF-EMTSSIQAVR 597

  Fly   400 IDGNGLTELQGNRTFSEAFPQLQKLGVSRNRFNCSYLHHL------------------------- 439
            :|||.|.::.|  .||. .|.|..|.:|.||.......|:                         
  Fly   598 LDGNELNDING--LFSN-MPSLLWLNISDNRLESFDYGHVPSTLQWLDLHKNRLSSLSNRFGLDS 659

  Fly   440 ----------------LIPPSLPESV---------VLNIEPDTNLDET 462
                            :.|.|:|.|:         :..::|||.:.:|
  Fly   660 ELKLQTLDVSFNQLQRIGPSSIPNSIELLFLNDNLITTVDPDTFMHKT 707

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 7/22 (32%)
LRR_8 118..178 CDD:290566 18/60 (30%)
leucine-rich repeat 120..143 CDD:275380 8/23 (35%)
leucine-rich repeat 144..167 CDD:275380 7/22 (32%)
leucine-rich repeat 168..191 CDD:275380 2/22 (9%)
LRR_8 192..250 CDD:290566 23/68 (34%)
leucine-rich repeat 192..215 CDD:275380 9/33 (27%)
LRR_RI <207..432 CDD:238064 65/228 (29%)
leucine-rich repeat 216..239 CDD:275380 9/22 (41%)
leucine-rich repeat 240..299 CDD:275380 17/61 (28%)
LRR_8 299..356 CDD:290566 17/57 (30%)
leucine-rich repeat 300..321 CDD:275380 5/21 (24%)
leucine-rich repeat 322..345 CDD:275380 6/22 (27%)
LRR_8 344..405 CDD:290566 14/60 (23%)
leucine-rich repeat 346..365 CDD:275380 5/18 (28%)
leucine-rich repeat 370..394 CDD:275380 5/23 (22%)
leucine-rich repeat 395..420 CDD:275380 7/24 (29%)
Toll-6NP_001246765.1 leucine-rich repeat 148..171 CDD:275380