DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and caps

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster


Alignment Length:411 Identity:111/411 - (27%)
Similarity:173/411 - (42%) Gaps:107/411 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 ESTLLYMPFHLFETFPYLKTLDVSNTNILELTRNAFSAASNLTYLNLAYNNLTSIQTSVFIGANV 143
            |.||..:|..|   .|.::.|.:.| |.|:...::....:.||:|:|::|::.:|....|.....
  Fly    60 EGTLDVLPIAL---NPAIQRLVIKN-NKLKTIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAK 120

  Fly   144 LMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEGNLLTSIQPE 208
            |..|.|.:|:|..:|...|.||.|||.:.|.|||:.||        ||                .
  Fly   121 LQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAEL--------EY----------------R 161

  Fly   209 VFRNMRRIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNELKNFQLTEKNIVHQLHLDNNYLTN 273
            .|..|.::.|:||..||:..|.|...   ..|:||                  ..|:||:|.|| 
  Fly   162 TFSPMVKLAELNLGQNRISHIDPHAL---DGLDNL------------------RVLYLDDNTLT- 204

  Fly   274 LTINATRFVRASHNQISELFL------------HQSLH-IETLDLSANKLSSISN--ITNITHML 323
             |:......:|.|: ::||:|            .|.|. :..|||....|.:||.  :..:..:.
  Fly   205 -TVPGELTFQALHS-LAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLR 267

  Fly   324 YLDVSDNPIGPLNISTFSQLKRLRGLNL-----------RGTGIRELKF--------------GM 363
            :||:|||.:..:..:.|.:|.||..||:           ..:|:|||:.              |.
  Fly   268 FLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGA 332

  Fly   364 FSKQKYLEELDLS----FNNLTILNLDMFVPYLTNLKKFLIDGNGLTELQGNRTFSEAFPQLQKL 424
            ||....||.|:||    .|.|:.:.|. .:|:|:.:   ::..|.|:.|.....   .:..||.|
  Fly   333 FSGNTNLEHLNLSSNKQLNELSSIALG-GLPHLSTV---VLKANQLSSLDEGLV---PWADLQTL 390

  Fly   425 GVSRNRFNCS----YLHHLLI 441
            .:|.|.|.|.    :|.|||:
  Fly   391 DLSENPFECDCRLLWLRHLLV 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 4/22 (18%)
LRR_8 118..178 CDD:290566 22/59 (37%)
leucine-rich repeat 120..143 CDD:275380 7/22 (32%)
leucine-rich repeat 144..167 CDD:275380 9/22 (41%)
leucine-rich repeat 168..191 CDD:275380 8/22 (36%)
LRR_8 192..250 CDD:290566 12/57 (21%)
leucine-rich repeat 192..215 CDD:275380 2/22 (9%)
LRR_RI <207..432 CDD:238064 68/268 (25%)
leucine-rich repeat 216..239 CDD:275380 7/22 (32%)
leucine-rich repeat 240..299 CDD:275380 16/70 (23%)
LRR_8 299..356 CDD:290566 17/70 (24%)
leucine-rich repeat 300..321 CDD:275380 6/22 (27%)
leucine-rich repeat 322..345 CDD:275380 7/22 (32%)
LRR_8 344..405 CDD:290566 22/89 (25%)
leucine-rich repeat 346..365 CDD:275380 8/43 (19%)
leucine-rich repeat 370..394 CDD:275380 10/27 (37%)
leucine-rich repeat 395..420 CDD:275380 3/24 (13%)
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 4/21 (19%)
LRR_8 96..155 CDD:290566 22/58 (38%)
leucine-rich repeat 97..120 CDD:275380 7/22 (32%)
leucine-rich repeat 121..144 CDD:275380 9/22 (41%)
LRR_8 143..201 CDD:290566 26/102 (25%)
leucine-rich repeat 145..168 CDD:275380 12/46 (26%)
LRR_RI 147..397 CDD:238064 76/304 (25%)
leucine-rich repeat 169..192 CDD:275380 8/25 (32%)
leucine-rich repeat 193..217 CDD:275380 9/43 (21%)
LRR_8 217..276 CDD:290566 16/59 (27%)
leucine-rich repeat 218..241 CDD:275380 5/22 (23%)
leucine-rich repeat 242..265 CDD:275380 6/22 (27%)
LRR_8 265..321 CDD:290566 15/55 (27%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 4/22 (18%)
LRR_8 312..374 CDD:290566 17/65 (26%)
leucine-rich repeat 314..335 CDD:275380 3/20 (15%)
leucine-rich repeat 339..363 CDD:275380 8/24 (33%)
LRRCT 395..445 CDD:214507 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453577
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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