Protein Alignment CG4950 and trn

DIOPT Version :10

• Sequence 1: NP_648855.2
• Gene: CG4950 / 39783
• FlyBaseID: FBgn0036587
• Length: 574
• Species: Drosophila melanogaster
• Sequence 2: NP_001261796.1
• Gene: trn / 39491
• FlyBaseID: FBgn0010452
• Length: 751
• Species: Drosophila melanogaster
• Alignment Length: 394
• Identity: 105/394 - (26%)
• Similarity: 179/394 - (45%)
• Gaps: 37/394 - (9%)

  Fly    63 IKNIPPG----NMVKFMKFYESTLLYMPFHLFETFPYLKTLDVSNTNILELTRNAFSAASNLTYL 123
            :.|.|||    :....::..|..|..:|..|   .|.::.| |..:|.::...::....:.||:|
  Fly    27 LANCPPGCQCDDNTLVVQCGEGQLDVLPIAL---NPSIQRL-VIKSNKIKTIDSSIQFYAELTFL 87

  Fly   124 NLAYNNLTSIQTSVFIGANVLMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKD 188
            :|:.|:|.:|....|.....|..:.|::|:|..:|...|.||..::.:.|.||.:.|||...|..
  Fly    88 DLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTP 152

  Fly   189 NEYLEKVSFEGNLLTSIQPEVFRNMRRIKEVNLSNNRLIFI-HPDTFADAASLENLVLSYNELKN 252
            ...:|:::...|.:..:.|:.|..:.:::.:.|.:|.|..: .|..|....||..|.|..|.|::
  Fly   153 LLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQS 217

  Fly   253 FQLTEKNIVHQLHLDNNYLTNLTINATRFVRASHNQISELFLHQSLHIETLDLSANKLSSISNI- 316
            .|.       ....|...||.|.:........||:....|   |.|.|  ||||.|:|..|.::
  Fly   218 IQA-------DAFQDLKGLTRLELKGASLRNISHDSFLGL---QELRI--LDLSDNRLDRIPSVG 270

  Fly   317 -TNITHMLYLDVSDNPIGPLNISTFSQLKRLRGLNLRGT-GIRELKFGMFSKQKYLEELDLSFNN 379
             :.:..:..|.:..|....::...|..||:|:.|.:.|. .::.:..|.||....||.|:||.|.
  Fly   271 LSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNK 335

  Fly   380 LTILNLDMFVPYLTNLKKFLIDGNGLTEL-QGNRTFSEAFP--QLQKLGVSRNRFNCS----YLH 437
            :.:...:..:..|:.||..::..|.||.| :|      .||  .||.|.:|.|..:|.    :||
  Fly   336 MLLEVQEGALSGLSQLKHVVLKANALTSLAEG------LFPWKDLQTLDLSENPLSCDCRVMWLH 394

  Fly   438 HLLI 441
            :||:
  Fly   395 NLLV 398

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4950	NP_648855.2	LRR	96..411	CDD:443914	83/319 (26%)
		leucine-rich repeat	96..119	CDD:275380	3/22 (14%)
		leucine-rich repeat	120..143	CDD:275380	8/22 (36%)
		leucine-rich repeat	144..167	CDD:275380	8/22 (36%)
		leucine-rich repeat	168..191	CDD:275380	7/22 (32%)
		leucine-rich repeat	192..215	CDD:275380	4/22 (18%)
		leucine-rich repeat	216..239	CDD:275380	5/23 (22%)
		leucine-rich repeat	240..299	CDD:275380	14/58 (24%)
		leucine-rich repeat	300..321	CDD:275380	8/22 (36%)
		leucine-rich repeat	322..345	CDD:275380	4/22 (18%)
		leucine-rich repeat	346..365	CDD:275380	4/19 (21%)
		leucine-rich repeat	370..394	CDD:275380	7/23 (30%)
		leucine-rich repeat	395..420	CDD:275380	9/27 (33%)
trn	NP_001261796.1	leucine-rich repeat	62..80	CDD:275380	3/18 (17%)
		LRR	82..406	CDD:443914	93/335 (28%)
		leucine-rich repeat	84..107	CDD:275380	8/22 (36%)
		leucine-rich repeat	108..131	CDD:275380	8/22 (36%)
		leucine-rich repeat	132..155	CDD:275380	7/22 (32%)
		leucine-rich repeat	156..179	CDD:275380	4/22 (18%)
		leucine-rich repeat	180..204	CDD:275380	5/23 (22%)
		leucine-rich repeat	205..228	CDD:275380	7/29 (24%)
		leucine-rich repeat	229..252	CDD:275380	6/25 (24%)
		leucine-rich repeat	253..276	CDD:275380	9/24 (38%)
		leucine-rich repeat	277..300	CDD:275380	4/22 (18%)
		leucine-rich repeat	301..322	CDD:275380	5/20 (25%)
		leucine-rich repeat	326..350	CDD:275380	7/23 (30%)
		leucine-rich repeat	351..373	CDD:275380	9/27 (33%)
		LRRCT	382..434	CDD:214507	6/17 (35%)