DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and let-4

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_510425.2 Gene:let-4 / 181554 WormBaseID:WBGene00002282 Length:773 Species:Caenorhabditis elegans


Alignment Length:629 Identity:141/629 - (22%)
Similarity:242/629 - (38%) Gaps:156/629 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ILILAISSCDG------------SGGDIPLRCDEYDSMGYMDV---NEA-FCTVTGFTVTHSQNV 61
            :||.:.::|.|            ||  |.|.|....:.|.:.:   |:| ...:...|:..::.|
 Worm    13 LLINSTNACPGVITQACFCSEVHSG--IVLDCSNSSASGILQIIRTNQAQVGLIQSLTMNQAELV 75

  Fly    62 VIKNIPPG--------------NMVK---------FMKFYESTLL------YMPFHLFETFPYLK 97
               .:||.              |.:|         .....|..:|      .:|.......|.|.
 Worm    76 ---ELPPNFFSGLFIRRLDLSQNKIKKIDDAAFAGINPVLEEVVLNHNLIEKVPAAALAGLPNLL 137

  Fly    98 TLDVSNTNILELTRNAFSAASNLTY--------------------------LNLAYNNLTSIQTS 136
            .||:||.:|:|:.........|..|                          :||.:||:|::.:|
 Worm   138 RLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTFQNVKNSIQTINLGHNNMTAVPSS 202

  Fly   137 VFIGANVLMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEGNL 201
            ...|...|..|.|..|.|..|....|..|..::.:.|.||.:.||:...|.:...|..:...||.
 Worm   203 AIRGLKQLQSLHLHKNRIEQLDALNFLNLPVLNLLNLAGNQIHELNRQAFLNVPSLRYLYLSGNK 267

  Fly   202 LTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNELKNFQ---LTEKNIVHQ 263
            :|.:....|:...:::.::|:||.:..|..::.:....|..|.|::|::.|..   .|..:|| .
 Worm   268 ITKLTAYQFQTFEQLEMLDLTNNEIGAIPANSLSGLKQLRQLYLAHNKISNISSNAFTNSSIV-V 331

  Fly   264 LHLDNNYLTNLT------INATRFVRASHNQISEL---FLHQSLHIETLDLSANKLSSISNITNI 319
            |.|.:|.|..||      :...:.|....|||..:   ..:.:..:..|||:.|:|:.|:..|.:
 Worm   332 LVLSSNELKTLTAGIISGLPNLQQVSFRDNQIKTINRNAFYDAASLVMLDLAKNQLTEIAPTTFL 396

  Fly   320 T--HMLYLDVSDNPIGPLNISTFSQ------LKR-----LRGLNL--RGTGIRELKFGMFSKQKY 369
            .  ::|.:|:|:|.:.....|.|:.      ||.     ...|::  :|||:            |
 Worm   397 AQLNLLLVDLSENKLPKTPYSAFNSRVGTVLLKENPLVCTENLHMLQQGTGV------------Y 449

  Fly   370 LEEL-DLSFNN---------LTILNLDMFV----PYLTNLKKFLIDGNGLTEL--QGNRTFSEAF 418
            :.:. |:....         |..:..|..:    |.|..:.|..|..|..|..  |..:..|.||
 Worm   450 VRDSPDIICGRKPTPKPEPVLVPIVTDSLISTQRPALVQIPKMQIHRNVHTTTGDQAPQIPSGAF 514

  Fly   419 PQLQKLGVSR------NRFNCSYLHHLLIPPSLPESVVLNIEPDTNLDETPHIRDVSCISQSQEV 477
            .|:. ||.||      :||       :|..||..|.   ::||...|  || |:.:...|:..|:
 Worm   515 QQID-LGKSRSLPRGHSRF-------ILDKPSTREQ---SVEPTEEL--TP-IQPIILPSREDEI 565

  Fly   478 VNASF---TAEESKLESQIQMLSKQLDIVGSHSKNLELHLAFMQ 518
            ..:|.   |::|| :|:..|.:....||:...:..|...:.|::
 Worm   566 RQSSMEAGTSQES-VEATSQKIPSTTDIIDRPNVVLPFPVPFLK 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 7/22 (32%)
LRR_8 118..178 CDD:290566 20/85 (24%)
leucine-rich repeat 120..143 CDD:275380 8/48 (17%)
leucine-rich repeat 144..167 CDD:275380 8/22 (36%)
leucine-rich repeat 168..191 CDD:275380 6/22 (27%)
LRR_8 192..250 CDD:290566 13/57 (23%)
leucine-rich repeat 192..215 CDD:275380 5/22 (23%)
LRR_RI <207..432 CDD:238064 62/273 (23%)
leucine-rich repeat 216..239 CDD:275380 4/22 (18%)
leucine-rich repeat 240..299 CDD:275380 18/70 (26%)
LRR_8 299..356 CDD:290566 18/71 (25%)
leucine-rich repeat 300..321 CDD:275380 7/22 (32%)
leucine-rich repeat 322..345 CDD:275380 7/28 (25%)
LRR_8 344..405 CDD:290566 14/81 (17%)
leucine-rich repeat 346..365 CDD:275380 4/20 (20%)
leucine-rich repeat 370..394 CDD:275380 5/37 (14%)
leucine-rich repeat 395..420 CDD:275380 8/26 (31%)
let-4NP_510425.2 leucine-rich repeat 66..86 CDD:275380 4/22 (18%)
LRR_RI <71..275 CDD:238064 43/206 (21%)
LRR_8 88..146 CDD:290566 11/57 (19%)
leucine-rich repeat 88..111 CDD:275380 2/22 (9%)
leucine-rich repeat 112..135 CDD:275380 3/22 (14%)
leucine-rich repeat 136..160 CDD:275380 7/23 (30%)
LRR_8 156..220 CDD:290566 13/63 (21%)
leucine-rich repeat 161..184 CDD:275380 1/22 (5%)
leucine-rich repeat 186..209 CDD:275380 7/22 (32%)
leucine-rich repeat 210..257 CDD:275380 14/46 (30%)
LRR_RI <250..411 CDD:238064 39/161 (24%)
LRR_8 256..316 CDD:290566 13/59 (22%)
leucine-rich repeat 258..281 CDD:275380 5/22 (23%)
leucine-rich repeat 282..305 CDD:275380 4/22 (18%)
leucine-rich repeat 306..328 CDD:275380 6/21 (29%)
LRR_8 327..387 CDD:290566 16/60 (27%)
leucine-rich repeat 329..350 CDD:275380 8/21 (38%)
leucine-rich repeat 353..400 CDD:275380 11/46 (24%)
leucine-rich repeat 356..376 CDD:275380 4/19 (21%)
leucine-rich repeat 401..419 CDD:275380 5/17 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45617
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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