DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4950 and LINGO2

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_001245211.1 Gene:LINGO2 / 158038 HGNCID:21207 Length:606 Species:Homo sapiens


Alignment Length:598 Identity:130/598 - (21%)
Similarity:239/598 - (39%) Gaps:147/598 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LEVIVILILAISSCDGSGGDIPLRCDEYDSMGYMDVNEAFCTVTGFTVT-HSQNVVIKNIPPGNM 71
            |.:.|:||..     ||....|.||:              |:....:|: |.:.::.  ||.|..
Human    13 LGLAVVLIFM-----GSTIGCPARCE--------------CSAQNKSVSCHRRRLIA--IPEGIP 56

  Fly    72 V--KFMKFYESTLLYMPFHLFETFPYLKTLDVSNTNILELTRNAFSAASNLTYLNLAYNNLTSIQ 134
            :  |.:...::.|..:....|.::|.|:.:|:|:..|..:...||:...||..|.|..|.|..:.
Human    57 IETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVP 121

  Fly   135 TSVFIGANVLMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEG 199
            ..||.|.:.|.:||:|.|:|..|....|..||.:..:.:..|.|..:.:..|.....||:::.|.
Human   122 LGVFTGLSNLTKLDISENKIVILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLLSLEQLTLEK 186

  Fly   200 NLLTSIQPEVFRNMR-----RIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNELKNFQLTEKN 259
            ..||::..|...::|     .:|.:|: ||..::    .|.....|::|.:.|..|  ..:...|
Human   187 CNLTAVPTEALSHLRSLISLHLKHLNI-NNMPVY----AFKRLFHLKHLEIDYWPL--LDMMPAN 244

  Fly   260 IVHQLHLDNNYLTNLTINATRFVRASHNQISELFLHQSLHIETLDLSANKLSSISNITNITHMLY 324
            .::.|:|.:..:||..::...|:...|                                :.::.:
Human   245 SLYGLNLTSLSVTNTNLSTVPFLAFKH--------------------------------LVYLTH 277

  Fly   325 LDVSDNPIGPLNISTFSQLKRLRGLNLRGTGIRELKFGMFSKQKYLEELDLSFNNLTILNLDMFV 389
            |::|.|||..:....||.|.||:.|::.|..:|.::...|...::|..|::|.|.|..|..::| 
Human   278 LNLSYNPISTIEAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLEENVF- 341

  Fly   390 PYLTNLKKFLIDGNGLTELQGNRTFSEAFPQ-LQKLGVSRNRF--NCSYLHHLLIPPSL------ 445
                                       :.|: |:.|.::.|..  :|..|..|...|:|      
Human   342 ---------------------------SSPRALEVLSINNNPLACDCRLLWILQRQPTLQFGGQQ 379

  Fly   446 PESVVLNIEPDTNLDETPHIRDVSCISQSQEVVNASFTAEESKL-ESQIQMLSKQLDIVGSHSKN 509
            |    :...|||       ||:.|........::..||.::.|: |.::|.|      :....:.
Human   380 P----MCAGPDT-------IRERSFKDFHSTALSFYFTCKKPKIREKKLQHL------LVDEGQT 427

  Fly   510 LELHLAF----MQIFAYVM-----------GGLVLVGVVSLITLRYLKNQRSGRYDRSSIVFRSN 559
            ::|..:.    ..:.::|.           |...::|..:| .:|:.::|.||.|    :...||
Human   428 VQLECSADGDPQPVISWVTPRRRFITTKSNGRATVLGDGTL-EIRFAQDQDSGMY----VCIASN 487

  Fly   560 A----TMEANLTL 568
            |    |..|:||:
Human   488 AAGNDTFTASLTV 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 6/22 (27%)
LRR_8 118..178 CDD:290566 20/59 (34%)
leucine-rich repeat 120..143 CDD:275380 8/22 (36%)
leucine-rich repeat 144..167 CDD:275380 9/22 (41%)
leucine-rich repeat 168..191 CDD:275380 3/22 (14%)
LRR_8 192..250 CDD:290566 15/62 (24%)
leucine-rich repeat 192..215 CDD:275380 7/27 (26%)
LRR_RI <207..432 CDD:238064 43/232 (19%)
leucine-rich repeat 216..239 CDD:275380 5/22 (23%)
leucine-rich repeat 240..299 CDD:275380 11/58 (19%)
LRR_8 299..356 CDD:290566 12/56 (21%)
leucine-rich repeat 300..321 CDD:275380 0/20 (0%)
leucine-rich repeat 322..345 CDD:275380 8/22 (36%)
LRR_8 344..405 CDD:290566 13/60 (22%)
leucine-rich repeat 346..365 CDD:275380 4/18 (22%)
leucine-rich repeat 370..394 CDD:275380 7/23 (30%)
leucine-rich repeat 395..420 CDD:275380 0/24 (0%)
LINGO2NP_001245211.1 LRRNT 27..60 CDD:214470 9/48 (19%)
leucine-rich repeat 39..57 CDD:275380 5/19 (26%)
LRR 1 58..79 3/20 (15%)
leucine-rich repeat 59..82 CDD:275380 3/22 (14%)
LRR_8 60..117 CDD:316378 15/56 (27%)
LRR 2 82..103 6/20 (30%)
leucine-rich repeat 83..106 CDD:275380 6/22 (27%)
LRR_8 106..165 CDD:316378 20/58 (34%)
LRR 3 106..127 8/20 (40%)
leucine-rich repeat 107..130 CDD:275380 8/22 (36%)
LRR 4 130..151 8/20 (40%)
leucine-rich repeat 131..154 CDD:275380 9/22 (41%)
LRR_5 146..276 CDD:331043 29/168 (17%)
LRR 5 154..175 3/20 (15%)
leucine-rich repeat 155..178 CDD:275380 3/22 (14%)
LRR 6 178..199 6/20 (30%)
leucine-rich repeat 179..202 CDD:275380 6/22 (27%)
LRR 7 202..223 5/25 (20%)
leucine-rich repeat 203..250 CDD:275380 10/53 (19%)
LRR 8 226..247 5/22 (23%)
LRR_8 250..309 CDD:316378 17/90 (19%)
LRR 9 250..271 4/20 (20%)
leucine-rich repeat 251..274 CDD:275380 5/54 (9%)
LRR 10 274..295 6/20 (30%)
leucine-rich repeat 275..298 CDD:275380 8/22 (36%)
LRR_8 298..357 CDD:316378 17/86 (20%)
LRR 11 298..319 6/20 (30%)
leucine-rich repeat 299..322 CDD:275380 5/22 (23%)
LRR 12 322..343 7/48 (15%)
leucine-rich repeat 323..343 CDD:275380 7/47 (15%)
PCC 327..>391 CDD:188093 20/102 (20%)
I-set 410..500 CDD:254352 20/100 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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