DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4950 and Gp5

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_032174.2 Gene:Gp5 / 14729 MGIID:1096363 Length:567 Species:Mus musculus


Alignment Length:441 Identity:109/441 - (24%)
Similarity:173/441 - (39%) Gaps:73/441 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NEAFCTVTGFTVTHSQNVVIKN-----IPPGNMVKFMKFYESTLLYMPFHLFETFPYLKTLDVSN 103
            |.:|   :|.||.  |.:::.:     |.||.....:|                   ||||.::.
Mouse    67 NHSF---SGMTVL--QRLMLSDSHISAIDPGTFNDLVK-------------------LKTLRLTR 107

  Fly   104 TNILELTRNAFSAASNLTYLNLAYNNLTSIQTSVFIGANVLMRLDLSYNEISSLSVNAFCGLHTI 168
            ..|..|.|........|..|.|.:|.|..:..::|.....|..|.|:.|::|.|..|.|..|..:
Mouse   108 NKISRLPRAILDKMVLLEQLFLDHNALRDLDQNLFQQLRNLQELGLNQNQLSFLPANLFSSLREL 172

  Fly   169 SQIYLTGNLLKELHNDIFKDNEYLEKVSFEGNLLTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDT 233
            ..:.|:.|.|..|...:......|||:....|.|||:...:..|:..:.|:.|..|.|..:.|..
Mouse   173 KLLDLSRNNLTHLPKGLLGAQVKLEKLLLYSNQLTSVDSGLLSNLGALTELRLERNHLRSVAPGA 237

  Fly   234 FADAASLENLVLSYNELKNFQ---LTEKNIVHQLHLDNNYLTNLTINATRFVRASHNQISELFLH 295
            |....:|.:|.||.|.|::..   ....:.|.:|.|..|.|..|    ...:......:.||:|:
Mouse   238 FDRLGNLSSLTLSGNLLESLPPALFLHVSSVSRLTLFENPLEEL----PDVLFGEMAGLRELWLN 298

  Fly   296 QSLHIETLDLSANKLSSISNITNITHMLYLDVSDNP-IGPLNISTFSQLKRLRGLNLRGTGIREL 359
             ..|:.||..:|        ..|::.:..|.::.|| :..|....|..|:.||.|.|....:.||
Mouse   299 -GTHLSTLPAAA--------FRNLSGLQTLGLTRNPRLSALPRGVFQGLRELRVLALHTNALAEL 354

  Fly   360 KFGMFSKQKYLEELDLSFNNLTILNLDMFVPYLTNLKKFLIDGNGLTELQGNRTFSEAFPQLQKL 424
            :........:|.::.|..|.|..|...:| ..|::|:...::.|.|..|.|: .|: |.|||.::
Mouse   355 RDDALRGLGHLRQVSLRHNRLRALPRTLF-RNLSSLESVQLEHNQLETLPGD-VFA-ALPQLTQV 416

  Fly   425 GVSRNRFNC--------SYLHHLLIPPSLPESVVLNIEPD-TNLDETPHIR 466
            .:..|.:.|        .:|.|               .|| ...||.|..|
Mouse   417 LLGHNPWLCDCGLWPFLQWLRH---------------HPDILGRDEPPQCR 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 7/22 (32%)
LRR_8 118..178 CDD:290566 17/59 (29%)
leucine-rich repeat 120..143 CDD:275380 6/22 (27%)
leucine-rich repeat 144..167 CDD:275380 9/22 (41%)
leucine-rich repeat 168..191 CDD:275380 4/22 (18%)
LRR_8 192..250 CDD:290566 19/57 (33%)
leucine-rich repeat 192..215 CDD:275380 8/22 (36%)
LRR_RI <207..432 CDD:238064 57/228 (25%)
leucine-rich repeat 216..239 CDD:275380 6/22 (27%)
leucine-rich repeat 240..299 CDD:275380 15/61 (25%)
LRR_8 299..356 CDD:290566 15/57 (26%)
leucine-rich repeat 300..321 CDD:275380 4/20 (20%)
leucine-rich repeat 322..345 CDD:275380 6/23 (26%)
LRR_8 344..405 CDD:290566 15/60 (25%)
leucine-rich repeat 346..365 CDD:275380 6/18 (33%)
leucine-rich repeat 370..394 CDD:275380 7/23 (30%)
leucine-rich repeat 395..420 CDD:275380 7/24 (29%)
Gp5NP_032174.2 LRR 1 75..96 5/22 (23%)
LRR_8 76..134 CDD:290566 16/78 (21%)
leucine-rich repeat 76..99 CDD:275380 4/24 (17%)
LRR 2 99..120 8/39 (21%)
leucine-rich repeat 100..123 CDD:275380 7/22 (32%)
LRR 3 123..144 6/20 (30%)
LRR_8 124..182 CDD:290566 17/57 (30%)
leucine-rich repeat 124..147 CDD:275380 6/22 (27%)
LRR_RI 126..402 CDD:238064 74/289 (26%)
LRR 4 147..168 8/20 (40%)
leucine-rich repeat 148..171 CDD:275380 9/22 (41%)
LRR 5 171..193 4/21 (19%)
leucine-rich repeat 172..195 CDD:275380 4/22 (18%)
LRR_8 195..254 CDD:290566 19/58 (33%)
LRR 6 195..216 7/20 (35%)
leucine-rich repeat 196..219 CDD:275380 8/22 (36%)
LRR 7 219..240 6/20 (30%)
leucine-rich repeat 220..243 CDD:275380 6/22 (27%)
LRR_8 243..302 CDD:290566 15/63 (24%)
LRR 8 243..264 6/20 (30%)
leucine-rich repeat 244..267 CDD:275380 6/22 (27%)
LRR 9 267..288 6/24 (25%)
leucine-rich repeat 268..291 CDD:275380 6/26 (23%)
LRR 10 291..312 7/29 (24%)
leucine-rich repeat 292..315 CDD:275380 8/31 (26%)
LRR_8 314..375 CDD:290566 15/60 (25%)
LRR 11 315..337 5/21 (24%)
leucine-rich repeat 316..338 CDD:275380 5/21 (24%)
LRR 12 340..361 6/20 (30%)
leucine-rich repeat 341..364 CDD:275380 6/22 (27%)
LRR_8 364..422 CDD:290566 17/60 (28%)
LRR 13 364..385 6/21 (29%)
leucine-rich repeat 365..388 CDD:275380 7/23 (30%)
LRR 14 388..409 6/22 (27%)
leucine-rich repeat 389..410 CDD:275380 6/22 (27%)
TPKR_C2 421..>454 CDD:301599 10/47 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.