DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4950 and AT1G33612

DIOPT Version :9

Sequence 1:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_001185131.1 Gene:AT1G33612 / 10723140 AraportID:AT1G33612 Length:455 Species:Arabidopsis thaliana


Alignment Length:376 Identity:88/376 - (23%)
Similarity:143/376 - (38%) Gaps:119/376 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 LEKVSFEGNLLTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNELKNFQLT 256
            |:.:..:||:.|...|....|:.|:..:||.||||....|:.|.....|.:|.||.|..  |...
plant   153 LKTLVIDGNMFTGHIPSSIANLTRLTWLNLGNNRLSGTIPNIFKSMKELNSLDLSRNGF--FGRL 215

  Fly   257 EKNI------VHQLHLDNNYLTNLTINATRFVRASHNQISELFLHQSLHIETLDLSANKLS---- 311
            ..:|      ::.|.|..|.|:....|               :|.:...:.||.||.||.|    
plant   216 PPSIASLAPTLYYLDLSQNNLSGTIPN---------------YLSRFEALSTLVLSKNKYSGVVP 265

  Fly   312 -SISNITNITHMLYLDVSDNPI-GPLNISTFSQLKRLRGLNLRGTGIRELKFGMFSKQKYLEELD 374
             |.:|:.|||:   ||:|.|.: ||     |..||.:.|                     :|.||
plant   266 MSFTNLINITN---LDLSHNLLTGP-----FPVLKSING---------------------IESLD 301

  Fly   375 LSFNNLTILNLDMFVPYLTNLKKFLIDGNGLTELQGNRTFSEAFPQLQKLG--VSRNRFNCSYLH 437
            ||:|..          :|..:.|::|....:..|           :|.|.|  :|.:.:..:..:
plant   302 LSYNKF----------HLKTIPKWMISSPSIYSL-----------KLAKCGLKISLDDWKLAGTY 345

  Fly   438 HLLIPPSLPESVVLNIEPDTNLDETPHIRDVSCISQSQEVVNASFTAEESKLESQIQMLS----- 497
            :.       :|:.|:   :..:..:|    ...:||.:.::  .|.|..:||...:..|:     
plant   346 YY-------DSIDLS---ENEISGSP----AKFLSQMKYLM--EFRAAGNKLRFDLGKLTFVRTL 394

  Fly   498 KQLDIVGSHSKNLELHLAFMQIFAYVMGGLVLVGVVSLITLRYLKNQRSGR 548
            :.||:    |:||        ||     |.||.....|.|:...:|...|:
plant   395 ETLDL----SRNL--------IF-----GRVLATFAGLKTMNVSQNHLCGK 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380
LRR_8 118..178 CDD:290566
leucine-rich repeat 120..143 CDD:275380
leucine-rich repeat 144..167 CDD:275380
leucine-rich repeat 168..191 CDD:275380
LRR_8 192..250 CDD:290566 20/57 (35%)
leucine-rich repeat 192..215 CDD:275380 6/22 (27%)
LRR_RI <207..432 CDD:238064 60/238 (25%)
leucine-rich repeat 216..239 CDD:275380 8/22 (36%)
leucine-rich repeat 240..299 CDD:275380 13/64 (20%)
LRR_8 299..356 CDD:290566 22/62 (35%)
leucine-rich repeat 300..321 CDD:275380 11/25 (44%)
leucine-rich repeat 322..345 CDD:275380 8/23 (35%)
LRR_8 344..405 CDD:290566 11/60 (18%)
leucine-rich repeat 346..365 CDD:275380 1/18 (6%)
leucine-rich repeat 370..394 CDD:275380 7/23 (30%)
leucine-rich repeat 395..420 CDD:275380 3/24 (13%)
AT1G33612NP_001185131.1 LRRNT_2 29..68 CDD:285463
leucine-rich repeat 84..103 CDD:275380
LRR_RI 121..404 CDD:238064 79/345 (23%)
LRR_8 151..211 CDD:290566 20/57 (35%)
leucine-rich repeat 153..176 CDD:275380 6/22 (27%)
leucine-rich repeat 177..200 CDD:275380 8/22 (36%)
leucine-rich repeat 201..225 CDD:275380 7/25 (28%)
LRR_8 224..284 CDD:290566 22/77 (29%)
leucine-rich repeat 226..249 CDD:275380 6/37 (16%)
leucine-rich repeat 250..273 CDD:275380 9/22 (41%)
leucine-rich repeat 274..296 CDD:275380 11/29 (38%)
leucine-rich repeat 297..324 CDD:275380 9/36 (25%)
leucine-rich repeat 325..370 CDD:275380 10/69 (14%)
leucine-rich repeat 394..414 CDD:275380 10/36 (28%)
leucine-rich repeat 415..441 CDD:275380 4/14 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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