DRSC/TRiP Functional Genomics Resources

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Protein Alignment PDCD-5 and AT1G29850

DIOPT Version :10

Sequence 1:NP_648848.1 Gene:PDCD-5 / 39776 FlyBaseID:FBgn0036580 Length:133 Species:Drosophila melanogaster
Sequence 2:NP_001319109.1 Gene:AT1G29850 / 839863 AraportID:AT1G29850 Length:138 Species:Arabidopsis thaliana


Alignment Length:107 Identity:37/107 - (34%)
Similarity:66/107 - (61%) Gaps:6/107 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MSQMQSQFGGGNDAEKQQAQQEQM-----RAQEEMKHSILSQVLDQQARARLNTLKVSKPEKAQM 73
            |.::.::.|.|....:|..:||:.     |..:|.:..:|||||..|||.|:..:.:.|||||:.
plant     1 MQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKPEKARG 65

  Fly    74 FENMVIRMAQMGQVRGKLDDAQFVSILESVNAQ-MPQSKSSV 114
            .|::::|.|||||:..|:.:.:.:::||.:|:| ..|:|.:|
plant    66 VEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTV 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDCD-5NP_648848.1 dsDNA_bind 9..117 CDD:460404 37/107 (35%)
AT1G29850NP_001319109.1 dsDNA_bind 1..108 CDD:460404 37/107 (35%)

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