DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tmx3 and pdia4

DIOPT Version :10

Sequence 1:NP_648847.3 Gene:Tmx3 / 39775 FlyBaseID:FBgn0036579 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_956073.2 Gene:pdia4 / 554998 ZFINID:ZDB-GENE-030131-5493 Length:642 Species:Danio rerio


Alignment Length:160 Identity:48/160 - (30%)
Similarity:72/160 - (45%) Gaps:6/160 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DRFIDVRHEGQ-WLVMFYAPWCGYCKKTEPIFALVAQAL--HATNVRVGRLDCTKYPAAAKEFKV 94
            |.|.||.:... .||.|||||||:||:..|.:...|:.|  ....:.:.::|.|.....|..|.|
Zfish   182 DNFDDVVNNADIILVEFYAPWCGHCKRLAPEYEKAAKELSNRTPPIPLAKVDATAESDLATRFGV 246

  Fly    95 RGYPTIMFIKGNMEFTYNGDRGRDELVDYALRMSGPPVQLVTRTESVDML--KGSHTIFFIFVGQ 157
            .||||:...:....|.|||.|.:..:|||....:|||.:.|...:.|..|  .|...:.......
Zfish   247 SGYPTLKIFRKGKAFDYNGPREKFGIVDYMSDQAGPPSKQVQTLKQVQELLRDGDDAVIVGVFSS 311

  Fly   158 QEGVVWDTYYAAAEGYQE-HGFFYATSEDI 186
            .|...::.|..|....:| :.|.:..:.|:
Zfish   312 DEDAAYEIYQEACNSLREDYKFMHTFNNDV 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmx3NP_648847.3 PDI_a_TMX3 27..128 CDD:239298 35/97 (36%)
ER_PDI_fam 28..>355 CDD:273457 48/160 (30%)
pdia4NP_956073.2 pdi_dom 64..165 CDD:273454
ER_PDI_fam 174..640 CDD:273457 48/160 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.