DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tmx3 and Pdia4

DIOPT Version :10

Sequence 1:NP_648847.3 Gene:Tmx3 / 39775 FlyBaseID:FBgn0036579 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_446301.2 Gene:Pdia4 / 116598 RGDID:619835 Length:643 Species:Rattus norvegicus


Alignment Length:217 Identity:64/217 - (29%)
Similarity:100/217 - (46%) Gaps:32/217 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SKVLELS----------------DRFIDVRHEGQ-WLVMFYAPWCGYCKKTEPIFALVAQAL--H 71
            :||.|:|                :.|.||.:... .||.|||||||:|||..|.:...|:.|  .
  Rat   160 AKVREVSQPDWTPPPEVTLTLTKENFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR 224

  Fly    72 ATNVRVGRLDCTKYPAAAKEFKVRGYPTIMFIKGNMEFTYNGDRGRDELVDYALRMSGPP-VQLV 135
            :..:.:.::|.|:....||.|.|.||||:...:....|.|||.|.:..:|||.:..|||| .:::
  Rat   225 SPPIPLAKVDATEQTDLAKRFDVSGYPTLKIFRKGRPFDYNGPREKYGIVDYMVEQSGPPSKEIL 289

  Fly   136 TRTESVDMLKGSHTIFFIFVGQQEGVVWDTYY-----AAAEGYQEHGFFYATSEDIAAQHFDFEK 195
            |..:..:.||....:..:.|.|..|   |..|     ||....:::.|.:..|.:||  .|....
  Rat   290 TLKQVQEFLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTFSTEIA--KFLKVS 349

  Fly   196 LPAVIVYKEE--QHHFYPHGHL 215
            |..:::.:.|  |..:.|..|:
  Rat   350 LGKLVLMQPEKFQSKYEPRMHV 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmx3NP_648847.3 PDI_a_TMX3 27..128 CDD:239298 40/119 (34%)
ER_PDI_fam 28..>355 CDD:273457 63/215 (29%)
Pdia4NP_446301.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..58
pdi_dom 65..166 CDD:273454 3/5 (60%)
CXXC. /evidence=ECO:0000250|UniProtKB:P08003 89..92
ER_PDI_fam 175..635 CDD:273457 60/202 (30%)
CXXC. /evidence=ECO:0000250|UniProtKB:P08003 553..556
Prevents secretion from ER 640..643
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.