DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)72Dn and PCN

DIOPT Version :10

Sequence 1:NP_001261930.1 Gene:l(3)72Dn / 39774 FlyBaseID:FBgn0263605 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_567317.2 Gene:PCN / 826172 AraportID:AT4G07410 Length:815 Species:Arabidopsis thaliana


Alignment Length:831 Identity:172/831 - (20%)
Similarity:300/831 - (36%) Gaps:241/831 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KPREIVSLAYSKSSKCLALSRATPVIELWNLEHAP---YLDRVIHLPTDSHVESIAWA------- 80
            ||..:|:||.|.....:|.:|....:|:|.:....   :....||...:|.:.|:||.       
plant    12 KPSPVVALANSSDDSQVAAAREDGSLEIWLVSPGAVGWHCQLTIHGDPNSRISSLAWCCSPSIGL 76

  Fly    81 -GNRLFSVDLSGKLIEWDVIKLKQRYEHSPTGNALWSIDVNPA---ETDI--------------- 126
             ..||||..:.|.:.|||:..|||:......|.::|.:.:.|.   .:|:               
plant    77 PSGRLFSSSIDGSISEWDLFDLKQKIVLESIGISIWQMALAPISGFSSDVEGIKNGYLSEKSNDE 141

  Fly   127 -AIGSEE--------------------------GHINILSIEN-DEITYKSLFNKQKGRVLCIKF 163
             .|||||                          |.:.:..|.| :::||.....:..||.|.:.:
plant   142 EEIGSEEDGSDSDEFHEKSEEEIDRILAAACDDGCVRLYRISNLEKLTYYRSLPRVSGRALSVTW 206

  Fly   164 DKTGTKLVTG-TEGFVRIWNVLKGTTLHTMTL------SEKNVIVWSLQVLSDNTIIAGDSAGFV 221
            .....::.:| ::|.:|.|:......::.:|.      |...:.||||..|..:.:::|||.|.|
plant   207 SPDAKRIFSGSSDGLIRCWDATSCHEVYRITAGLGGLGSSSEICVWSLLSLRCSVLVSGDSTGTV 271

  Fly   222 TVWDADNATQIDSTRVLDKNVFALAVNNKEDRLVCSGM--QPPLIRIFSKTKIKRE--ESTSERW 282
            ..||:::.|.:::......:|..||.....:|:..:|.  |..|.::...|...::  .|:|::|
plant   272 QFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSAGADGQVILYKLSGSTNGSQDLKPSSSQKW 336

  Fly   283 IKFLQRDAHKHYVKSLLVI----------DD------------------------------QIYS 307
            .......||.|.:::|.|.          ||                              .:.|
plant   337 DYIGYVKAHTHDIRALTVAVPISREDPFPDDILPDKASRKHRKKGKPVDFTYHKWAHLGVPMLIS 401

  Fly   308 GGRDGILTITS---------------SERMQAHLSQHAPFLKGSVASMAISKKLLLLRYPNSVHL 357
            .|.|..|...|               .:|:...:..::.|.|.|         |||::..:::.:
plant   402 AGDDAKLFAYSIQEFTKFSPHDICPAPQRIPMQMVHNSMFNKTS---------LLLVQGISTLDI 457

  Fly   358 WRLG-SVAPQGEDKKKPWALPVGHTEEQLLELPPQKLLQLNVKEHNFIQSAAISSDANWICYS-- 419
            .||. |....|....|                   .|:::..::...|..:|||:..:...||  
plant   458 LRLNISSDSSGRASTK-------------------SLVRVKSRDARKIICSAISNTGSHFAYSDQ 503

  Fly   420 ---TLKELRISRLKSDPLQVERLVDDLPEELQPASH-IIFTKQGDLVLLNPQNNHLSWFTLEEDL 480
               :|.||:.:.....|..|.|  ..|||  .|.:| :||:.....:::...:..:         
plant   504 IGPSLFELKKNEFTKCPWSVSR--RRLPE--LPFAHSMIFSSDCSRLIIAGHDRRI--------- 555

  Fly   481 VTFKYTIDLSE--------------------KCKNTISHVVISSHGEYIVAASSDHIISVWKLHG 525
                ||||:|.                    ..:..|:.:..||.|:::.|.:....|.|:.|. 
plant   556 ----YTIDISSLELVYAFTPSREEHEGEAPTPKEPPITKLFTSSDGQWLAAINCFGDIYVFNLE- 615

  Fly   526 KQYKHLLNLPRHRAGTTALSMHEDYPRVVVAYANGQLVEYDLVNRIFTCET-----------NEY 579
            .|.:|........|..||...|        .:.|..||.....|::|..:.           |.|
plant   616 TQRQHWFISRLDGASVTAAGFH--------PWNNNALVISTSSNQVFAFDVEARQLGKWSLLNTY 672

  Fly   580 LIPETRRHC---INGISLDPQ-NRNIFIVHTEGNLYVL------ERDQHLDPKELVSNSKSKKLS 634
            ::|:..:..   :.|:|..|. |.:..||::.....::      |.|:..|            |.
plant   673 VLPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEEDEEYD------------LP 725

  Fly   635 NGNRS-SVDGGSKGLSLK--TTLSRQVRLHLVHVSRLSPNELVNVSISTNN 682
            |||.| :::|....|.||  ...:|:.||....:...| ||..|..|..:|
plant   726 NGNLSKTLEGKLVNLGLKKGKGTNRKRRLDEYQLEGKS-NERKNFEILPSN 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)72DnNP_001261930.1 WD40 <30..258 CDD:441893 65/291 (22%)
WD40 repeat 74..106 CDD:293791 14/39 (36%)
WD40 repeat 115..151 CDD:293791 13/81 (16%)
WD40 repeat 158..193 CDD:293791 5/35 (14%)
WD40 repeat 283..331 CDD:293791 13/102 (13%)
WD40 290..>567 CDD:441893 66/358 (18%)
WD40 repeat 453..489 CDD:293791 5/35 (14%)
WD40 repeat 498..536 CDD:293791 9/37 (24%)
PCNNP_567317.2 WD40 <13..322 CDD:441893 69/308 (22%)
WD40 repeat 16..56 CDD:293791 8/39 (21%)
WD40 repeat 64..105 CDD:293791 14/40 (35%)
WD40 177..602 CDD:441893 90/469 (19%)
WD40 repeat 201..244 CDD:293791 6/42 (14%)
WD40 repeat 252..286 CDD:293791 12/33 (36%)
WD40 repeat 536..570 CDD:293791 7/46 (15%)
WD40 repeat 589..624 CDD:293791 9/35 (26%)

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