DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)72Dn and utp4

DIOPT Version :9

Sequence 1:NP_001261930.1 Gene:l(3)72Dn / 39774 FlyBaseID:FBgn0263605 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_596540.1 Gene:utp4 / 2540514 PomBaseID:SPBC19F5.02c Length:710 Species:Schizosaccharomyces pombe


Alignment Length:766 Identity:178/766 - (23%)
Similarity:320/766 - (41%) Gaps:142/766 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VHNVRFYTIKPREIVSLAYSKSS---------KCLALSRATPVIELWNLEHAPYLDRVIHLPTDS 72
            :|..||....|..|.::|:|..|         ..||:.||:..||:||..:...|..|::...|.
pombe     3 IHRCRFIDYTPSAITAMAFSHKSGQNDSMPNNLLLAVGRASGNIEIWNPRNDWCLKTVLYGGVDR 67

  Fly    73 HVESIAWAGN----RLFSVDLSGKLIEWDVIKLKQRYEHSPTGNALWSIDVNPAETDIAIGSEEG 133
            .:|.|.|:..    ||||:..|..:.||::...|..........|:|||.:......:|:|.::|
pombe    68 SIEGIVWSTGEEELRLFSIGFSTTITEWNLHTGKPLVNQDSNAGAIWSIAICDETKTLAVGCDDG 132

  Fly   134 HINILSIENDE--ITYKSLFNKQKGRVLCIKFDKTGTKLVTG-TEGFVRIWNVLKGTTLHTMTLS 195
            ...:..|....  |.:|.:..:|..|:|.:.| :|...||.| .:|.:::|::   :|.::..:|
pombe   133 SCVLFDISGGPGVIEFKRVLMRQTSRILSLDF-QTKDHLVGGCADGVIKVWDL---STPNSAIIS 193

  Fly   196 EKNV---------IVWSLQVLSDNTIIAGDSAGFVTVWDADNATQIDSTRVLDKNVFALAVNNKE 251
            ...|         ::|:::.|.|.||::.||:|.|..|:....|...|.::...:...|.|:...
pombe   194 RMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLSQSFKLHLADALCLGVSANG 258

  Fly   252 DRLVCSGMQPPLIRIFSKTKIKREESTSERWIKFLQRDAHKHYVKSLLVID----DQIYSGGRDG 312
            |.:..||:....|: :|:...|||      |:....|..|.|.|:.:.|.:    |.:.|||.|.
pombe   259 DMVFSSGIDRKTIQ-YSREGGKRE------WVSNSFRRFHSHDVRCMAVFECKSLDVLISGGMDM 316

  Fly   313 ILTI-------TSSERMQAHLSQHAPFLKGSVASMAISKK--LLLLRYPNSVHLWRLGSVAPQGE 368
            :|.:       ..:.||.:.:.|.        ..||::.|  |.:|...:.|.|||:||      
pombe   317 MLAVIPVRQFNRKNHRMISAVPQR--------PRMAVAPKARLFMLWNDHEVLLWRIGS------ 367

  Fly   369 DKKKPWALPVGHTEEQLLELPPQK-LLQLNVKEHNFIQSAAISSDANWICYSTLKELRISRLK-- 430
                                |..: ||::.:.:...|..||||.|...|..|::...::.:|:  
pombe   368 --------------------PGYRFLLKIVLADEENISHAAISPDGELIAISSVLRTKLYQLQYS 412

  Fly   431 SDPLQVERLVDDLPEELQPASHIIFTKQGDLVLLNPQNNHLSWFTLE------EDLVTFKYTIDL 489
            .:.::||.:.|.....: .||.:.||...:.::|...::.:  |.:|      ..|..|:.:...
pombe   413 DENVKVETVEDSFLSNI-GASLLSFTVDKNKLILVSNDSEI--FLIELSRLDSRQLEVFELSQPT 474

  Fly   490 SEK------------CKNTISHVVISSHGEYIVAASSDHIISVWKLHGKQYKHLLNLPRHRAGTT 542
            |:|            | :.|..:.:||.|:|...|.:...|..:.|....|.   .|||......
pombe   475 SKKIAPRQRSNVSSMC-DGICSIAVSSDGDYFAVADTVGNIFCYSLSNLTYS---ELPRVNTYVR 535

  Fly   543 ALSMHEDY-PRVVVAYANGQLVEYDLVNRIFT--CETNEYLIPETRRHCIN---GISLDPQNRNI 601
            |::...|. .|:.||.|..|:.|:|:.:|..:  .:.|...:|:.....::   |...|.::.:.
pombe   536 AMAFRPDVRGRLAVATAGNQVYEFDVQSRKLSEWSKNNSTNMPKEFSQLLDKAFGAFFDSKHPSR 600

  Fly   602 FIVHTEG-------NLYV----------LERDQHLDPKELVSNSKSKKLSNGNRSSVDGGSKGLS 649
            |.:.:..       ||.:          :|.:..:|     .|...|||:|.|.:.:.....|.|
pombe   601 FWIWSANWVSFFDLNLQLPAPRAAGKRKIEMNATVD-----GNLNDKKLANANSNGISNYGTGDS 660

  Fly   650 LKTTLSRQVRLHLVHVSRLSPNELVNVSISTNNLL--APLPPPYQRKKFGA 698
            ....::.:.|..|: |..:..:||:.|.....::|  ..:|..:...|||:
pombe   661 RCFWITHKYRPMLL-VGSVGNSELLVVERPIADMLMSKSMPASFYEHKFGS 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)72DnNP_001261930.1 WD40 20..268 CDD:295369 70/272 (26%)
WD40 57..529 CDD:225201 120/521 (23%)
WD40 repeat 74..106 CDD:293791 11/35 (31%)
WD40 repeat 115..151 CDD:293791 9/37 (24%)
WD40 repeat 158..193 CDD:293791 9/35 (26%)
WD40 repeat 283..331 CDD:293791 14/58 (24%)
WD40 repeat 453..489 CDD:293791 7/41 (17%)
WD40 <494..>603 CDD:295369 26/114 (23%)
WD40 repeat 498..536 CDD:293791 9/37 (24%)
utp4NP_596540.1 WD40 13..320 CDD:295369 84/317 (26%)
WD40 repeat 17..62 CDD:293791 13/44 (30%)
WD40 repeat 69..107 CDD:293791 11/37 (30%)
WD40 107..525 CDD:225201 106/466 (23%)
WD40 repeat 113..152 CDD:293791 9/38 (24%)
WD40 repeat 159..182 CDD:293791 7/23 (30%)
WD40 repeat 208..243 CDD:293791 12/34 (35%)
WD40 repeat 251..289 CDD:293791 11/44 (25%)
WD40 repeat 385..426 CDD:293791 11/40 (28%)
WD40 repeat 431..469 CDD:293791 8/39 (21%)
WD40 repeat 493..526 CDD:293791 9/35 (26%)
WD40 repeat 534..561 CDD:293791 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 76 1.000 Domainoid score I2475
eggNOG 1 0.900 - - E1_KOG2048
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40775
Inparanoid 1 1.050 137 1.000 Inparanoid score I1391
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005067
OrthoInspector 1 1.000 - - oto101846
orthoMCL 1 0.900 - - OOG6_102666
Panther 1 1.100 - - LDO PTHR44163
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1621
SonicParanoid 1 1.000 - - X13688
TreeFam 1 0.960 - -
1312.850

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