DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment elg1 and RFC1

DIOPT Version :9

Sequence 1:NP_996103.1 Gene:elg1 / 39770 FlyBaseID:FBgn0036574 Length:1162 Species:Drosophila melanogaster
Sequence 2:NP_014860.1 Gene:RFC1 / 854392 SGDID:S000005743 Length:861 Species:Saccharomyces cerevisiae


Alignment Length:948 Identity:181/948 - (19%)
Similarity:314/948 - (33%) Gaps:281/948 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 RSRRISSMDAQNQIVESKPPVVKAKDQDPGTEELLSKLSSPTKKRDSLLGYFPKVESPKEL-AEK 338
            :|.|.|:.....|:..|||.|:   |.|..:::      ..|.|            :||:: ...
Yeast    13 KSVRSSTSRPTRQVGSSKPEVI---DLDTESDQ------ESTNK------------TPKKMPVSN 56

  Fly   339 VIIAIETPPMETPKRRTLRRKSQQETPIVAESTPSSRPRRSCVGKARYDYDLETSPGKQQKAKP- 402
            ||...|||  |..|:..|..|.:..:|.|                         .|...:|.|| 
Yeast    57 VIDVSETP--EGEKKLPLPAKRKASSPTV-------------------------KPASSKKTKPS 94

  Fly   403 QKADES------------VEIIDLDNSNPAATPKKLAPLFVRQLPKPSPDPSVLKARQAFLQSGV 455
            .|:.:|            :..:||.|.:.....|     |..:....:.||..:.:.......|.
Yeast    95 SKSSDSASNITAQDVLDKIPSLDLSNVHVKENAK-----FDFKSANSNADPDEIVSEIGSFPEGK 154

  Fly   456 PDKIRQEQIRQKNFDQMYEDSYEVFPRLAHIGCESFGSKNGPLDIPFALRAEEEYSEVTKALPAN 520
            |:.:....|....          |.|.|.....|:...:.|              :.|||::   
Yeast   155 PNCLLGLTIVFTG----------VLPTLERGASEALAKRYG--------------ARVTKSI--- 192

  Fly   521 KRRAKASSITSCLP-ADFTSSKTLNKFNYATLPQLENKRGFVKLWKNDFDRFPTFKCYNQMREKY 584
                  ||.||.:. .|....|.|.|.....:..:: :.||.:|    ....|......:..||.
Yeast   193 ------SSKTSVVVLGDEAGPKKLEKIKQLKIKAID-EEGFKQL----IAGMPAEGGDGEAAEKA 246

  Fly   585 R------HFSAIDSAQ----DTQQMGESLVVTRRTRRSMEQNMAQNEEEAKPPPSAPNGELLFTE 639
            |      |..|...|:    ..::..:.|..||.:...:|::....||:.           |:|.
Yeast   247 RRKLEEQHNIATKEAELLVKKEEERSKKLAATRVSGGHLERDNVVREEDK-----------LWTV 300

  Fly   640 KYKPLLFEQVLVNLTPVQELREFLSSWSGNGGSNRNSQGMDDTFDMSNDSASMGSS-SNTMVLVG 703
            ||.|...:||..|...|.:|:.:|::|..:..::....|.|            ||. ....:|.|
Yeast   301 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKD------------GSGVFRAAMLYG 353

  Fly   704 PSSSGKTNAVFTLANDMNFNVLEINAGMKRTGKKLIQELQEATQSHQIRKDGKAGGGSSQQLLQK 768
            |...|||.|...:|.::.:::||.||...|:...|...::.|..:..:     .|.....:..|.
Yeast   354 PPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSV-----VGYFKHNEEAQN 413

  Fly   769 LQKSGLKAKAAAVEPPSEVRKSLILIEDADILFDNLDAGFTDAIYTLAASSKR---PVIVVATDP 830
            |.                 .|..::|.|.   .|.:..|....:..||...::   |:|::..:.
Yeast   414 LN-----------------GKHFVIIMDE---VDGMSGGDRGGVGQLAQFCRKTSTPLILICNER 458

  Fly   831 NCAHLQRLMQQNI-IHFQAPNALNISRFLAVLSLMENCPIE---LDELISVYLYNQQNLRKTLME 891
            |...::...:..: |.|:.|:|.:|...|..:::.|...::   :|.||       |..|..:.:
Yeast   459 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLI-------QTTRGDIRQ 516

  Fly   892 LQFYIQSGGDSTRDRTGGGIKSPTKTSNSRLA---------TVDG---SRIHQRFFEFFTSPQNV 944
            :...:.:...:|:......|...:|.....:|         .:||   |.|..|.|..     |.
Yeast   517 VINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTL-----ND 576

  Fly   945 QYRIPF-PVDFSLLRLNLPDLMASSAMLKEQQAAGGGSRTAA---------KRKSRSPKKAW--- 996
            :..:.| ..||:.|.:....|....::||..|:.......||         ::|.||.::.|   
Yeast   577 KIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLL 641

  Fly   997 -----LSSA-TGQKSDGHSSSLATL----------ASFY----------------DNI------- 1022
                 |||. ...|..||.:.....          |.:|                |.|       
Yeast   642 PLHAVLSSVYPASKVAGHMAGRINFTAWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIGLRLDYL 706

  Fly  1023 --------------------SVASLMD------SDCSDRLQWHLSEEIGHLLVEQ---ALQTGLA 1058
                                ||..:||      .|....:::.:..::...::::   .:::|..
Yeast   707 PTFRKRLLDPFLKQGADAISSVIEVMDDYYLTKEDWDSIMEFFVGPDVTTAIIKKIPATVKSGFT 771

  Fly  1059 TKECPYNLFDKPVQRFSICQHLGNGVLRSDSAKSLDFE 1096
            .|   ||....||..:.....:|.|.: ..|..:.|||
Yeast   772 RK---YNSMTHPVAIYRTGSTIGGGGV-GTSTSTPDFE 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elg1NP_996103.1 Selenoprotein_S <57..129 CDD:284376
P-loop_NTPase 699..828 CDD:304359 27/131 (21%)
RFC1NP_014860.1 COG5275 1..277 CDD:227600 68/354 (19%)
PRK04195 298..762 CDD:235250 95/512 (19%)
RFC1 621..776 CDD:400703 22/157 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5275
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23389
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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