DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment SsRbeta and SSR2

DIOPT Version :9

Sequence 1:	NP_524103.2	Gene:	SsRbeta / 39768	FlyBaseID:	FBgn0011016	Length:	190	Species:	Drosophila melanogaster
Sequence 2:	NP_003136.1	Gene:	SSR2 / 6746	HGNCID:	11324	Length:	183	Species:	Homo sapiens

Alignment Length:	185	Identity:	89/185 - (48%)
Similarity:	122/185 - (65%)	Gaps:	4/185 - (2%)

- Green bases have known domain annotations that are detailed below.

  Fly     6 LTLFALCAVFSTCLSEDETRARLLVSKQILNKYLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFH 70
            |..|.:.|:|:  :::.|..||||.||.:||:|.||..||.::|.|:||||.||..|.|.|..|.
Human     3 LLSFVVLALFA--VTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFP 65

  Fly    71 PEAFDVVGGQPTAVVDRIAPQTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETLQLAVSSEPG 135
            ||.|.:|.|......|||||.:|.:|.:|:||...||||||:|.::|.|.|:...: :..:|.||
Human    66 PEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVV-IGSTSAPG 129

  Fly   136 EGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLAIPLALWHQSKSKYERSGKNKKH 190
            :|||:...|:::|||.||.||.||.||||||:.|||.||:.||.||: :.|.||:
Human   130 QGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWYSSKRKYD-TPKTKKN 183

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
SsRbeta	NP_524103.2	TRAP_beta	9..186	CDD:283423	85/176 (48%)
SSR2	NP_003136.1	TRAP_beta	4..179	CDD:310394	85/178 (48%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C165157814
Domainoid	1	1.000	168	1.000	Domainoid score	I3844
eggNOG	1	0.900	-	-		E1_KOG3317
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H2369
Inparanoid	1	1.050	171	1.000	Inparanoid score	I4109
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG55840
OrthoDB	1	1.010	-	-		D1286165at2759
OrthoFinder	1	1.000	-	-		FOG0005573
OrthoInspector	1	1.000	-	-		oto88709
orthoMCL	1	0.900	-	-		OOG6_105222
Panther	1	1.100	-	-	LDO	PTHR12861
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R2819
SonicParanoid	1	1.000	-	-		X5211
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
User_Submission	0	0.000	Not matched by this tool.
	16	15.800