DRSC/TRiP Functional Genomics Resources

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Protein Alignment IntS9 and Cpsf3

DIOPT Version :9

Sequence 1:NP_648838.3 Gene:IntS9 / 39763 FlyBaseID:FBgn0036570 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_061283.2 Gene:Cpsf3 / 54451 MGIID:1859328 Length:684 Species:Mus musculus


Alignment Length:753 Identity:148/753 - (19%)
Similarity:273/753 - (36%) Gaps:230/753 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DLAKPCYIITFKGLRIMLDCGLTEQTVLNFLPLPFVQSLKWSNLPNFVPSRDHDPQMDGELKDCC 73
            ::.:.|.|:.|||.:||||||:                               .|.::|      
Mouse    22 EVGRSCIILEFKGRKIMLDCGI-------------------------------HPGLEG------ 49

  Fly    74 GRVFVDSTPEFNLPMDKMLDFSEVDVILISNYL--NMLALPYITENTGFKGKVYATEPTLQIGRF 136
                :|:.|..:|     :|.:|:|::|||::.  :..|||:..:.|.|||:.:.|..|..|.|:
Mouse    50 ----MDALPYIDL-----IDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW 105

  Fly   137 FLEELVDYIEVSPKACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQGSLSKVTIMGYDEK 201
            .|.   ||::||..:....|:.|                        .|::.|:.|:..:.:.|.
Mouse   106 LLS---DYVKVSNISADDMLYTE------------------------TDLEESMDKIETINFHEV 143

  Fly   202 LDILGAFIATPVSSGYCLGSSNWVLSTAHEKICYVSGSSTLTTHPRPINQSALKHADVLIMTGLT 266
            .::.|..... ..:|:.||::.:::..|..|:.|....|              :..|..:|.  .
Mouse   144 KEVAGIKFWC-YHAGHVLGAAMFMIEIAGVKLLYTGDFS--------------RQEDRHLMA--A 191

  Fly   267 QAPTVNPDTKLGE-----------------LCMNVALTIRNNGSALIPCYPSGVVYDLFECLTQN 314
            :.|.:.||..:.|                 .|..|...:...|..|||.:..|...:|...|.:.
Mouse   192 EIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEY 256

  Fly   315 LEN-AGLNNVPMFFISPVADSSLA----YSNILAEWLSSAKQNKVYLPDDPFPHAFYLRNNKLKH 374
            .:| ..|:::|:::.|.:|...:|    |.|.:.:.:  .||..:   ::||   .:...:.||.
Mouse   257 WQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI--RKQINI---NNPF---VFKHISNLKS 313

  Fly   375 YNHVFSEGFSKDFRQPCVVFCGHPSLRFGDAVHFIEMWGNNPNNSI--------------IFTEP 425
            .:|....|       |.||......::.|.:....|.|..:..|.:              |.:||
Mouse   314 MDHFDDIG-------PSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 371

  Fly   426 DFPYLQVLAPFQPLAMKAFYCPIDTSLNYQQANKLIKELKPN--VLV---------IPEAYTKPH 479
            : ....:.....||.|...|.......:|||.::.|:.|||.  :||         :..|..:.:
Mouse   372 E-EITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREY 435

  Fly   480 PSAPNLFIE--QP-DKKIITF-----KCGEIIRLPLKRKLDRIYITSELAQK-------ISPKEV 529
            .....:.||  .| :.:.:|.     |..:::.....:|.::....|.:..|       :||.::
Mouse   436 EDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDL 500

  Fly   530 A--AGVTFST----------------------LTG---VLQVKDKVHCIQPCADSVKDETISSN- 566
            :  ..:..||                      |||   .|::::|     |.....|..|:... 
Mouse   501 SNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQEK-----PALKVFKSITVVQEP 560

  Fly   567 --------SAPTKE-----------DVLKNVKYEYGSIDVDAVMKKLAQDGFSNIKLDRTGGALT 612
                    :.|:.:           :|..|.|...|:  |..|.|||....:|. :|:    .:.
Mouse   561 GMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGA--VQKVSKKLEMHVYSK-RLE----VML 618

  Fly   613 LNLVNEDTVIKFEDNETHIICGGKPTTRLKLRDTIMKC 650
            .::..||.|...:|:...:...|| |..:.|....::|
Mouse   619 QDIFGEDCVSVKDDSVLSVTVDGK-TANINLETRAVEC 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IntS9NP_648838.3 metallo-hydrolase-like_MBL-fold 1..264 CDD:304873 54/256 (21%)
Beta-Casp 304..428 CDD:214983 28/142 (20%)
Cpsf3NP_061283.2 CPSF3-like_MBL-fold 12..205 CDD:293850 57/272 (21%)
YSH1 14..454 CDD:224157 110/537 (20%)
CPSF73-100_C 479..682 CDD:371691 35/190 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1236
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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