DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ATPsynbetaL and Kdm5b

DIOPT Version :9

Sequence 1:NP_648836.2 Gene:ATPsynbetaL / 39761 FlyBaseID:FBgn0036568 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_690855.2 Gene:Kdm5b / 75605 MGIID:1922855 Length:1544 Species:Mus musculus


Alignment Length:286 Identity:62/286 - (21%)
Similarity:99/286 - (34%) Gaps:100/286 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   404 VYVPA-DDLSDPAPAATFSHLDATTVLSRPIAE-LGIYPA-------------VDPLDSSSRILD 453
            |:.|: ::.:||   ..|.|      ..||||| .||...             ||.|..:.||  
Mouse    34 VFEPSWEEFADP---FAFIH------KIRPIAEQTGICKVRPPPDWQPPFACDVDKLHFTPRI-- 87

  Fly   454 PDVVGEEHYNVARAVQKT-------LQAYKSLQ-----------DIIAILGMDELSEEDK--LTV 498
                  :..|...|..:.       :..|..||           .|:.:..:::|..|:.  ..|
Mouse    88 ------QRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVV 146

  Fly   499 ARARKMQRFLSQPFQVAEIFTGHPGKLVPVEKCVEG-FKRLLNGEYDDIPEIAFYMVGDAEEVLA 562
            .:.||..:       :|......|||.|...  :.| ::|:|| .|:      .::.||:...|.
Mouse   147 CKDRKWTK-------IATKMGFAPGKAVGSH--IRGHYERILN-PYN------LFLSGDSLRCLQ 195

  Fly   563 KAT-----------------QLAASMSGDAPPA-KAEAKKDEKKDTK--PEEGKKEE-------- 599
            |..                 :.:...:...||| :|:..:.|..:.|  |||..:..        
Mouse   196 KPNLTSDTKDKEYKPHDIPQRQSVQPAETCPPARRAKRMRAEAMNIKIEPEEATEARTHNLRRRM 260

  Fly   600 ---PPKGEDKKEEAKDDKPKEPEKKD 622
               .||.|::||.....|.:..||||
Mouse   261 GCTTPKWENEKEMKSTIKQEPTEKKD 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynbetaLNP_648836.2 PRK09280 103..568 CDD:236447 43/216 (20%)
ATP-synt_ab_N 106..173 CDD:280947
F1-ATPase_beta 175..454 CDD:238553 18/64 (28%)
ATP-synt_ab_C 462..571 CDD:278722 25/146 (17%)
Kdm5bNP_690855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
JmjN 31..72 CDD:128818 13/46 (28%)
BRIGHT 98..188 CDD:128777 19/105 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 200..228 1/27 (4%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 269..297 7/18 (39%)
PHD1_KDM5B 311..356 CDD:277076
JmjC 486..602 CDD:202224
zf-C5HC2 692..744 CDD:280996
PLU-1 757..1086 CDD:285609
PHD_SF 1178..1221 CDD:304600
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1297..1318
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1374..1447
PHD3_KDM5B 1486..1535 CDD:277157
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.