DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsynbetaL and Kdm6b

DIOPT Version :10

Sequence 1:NP_648836.2 Gene:ATPsynbetaL / 39761 FlyBaseID:FBgn0036568 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_038942397.1 Gene:Kdm6b / 363630 RGDID:1307629 Length:1636 Species:Rattus norvegicus


Alignment Length:180 Identity:38/180 - (21%)
Similarity:58/180 - (32%) Gaps:57/180 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VSWAKMATACARIGLKMGPGTG--------GYRGNYLGNPVVFPRYLHASLSLWD--------DK 51
            |.|.:....|..|...:||.|.        .|..|.:.|.......:|.|   |:        |.
  Rat  1462 VHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPMIHVS---WNVARTVKISDP 1523

  Fly    52 DKKKSGDECEPEPQEVCKTDAELV----KK-------KDEAEDECEE----------KKSDGGGK 95
            |..|....|..:..:.|:...|.:    ||       |||....|.|          ..|:.|.:
  Rat  1524 DLFKMIKFCLLQSMKHCQVQRESLVRAGKKIAYQGRVKDEPAYYCNECDVEVFNILFVTSENGSR 1588

  Fly    96 -----------KLESKGRKGVIHAVIGPVIDVYFEEEVPEVLNALQVQDA 134
                       :..|.|.:||:      |::.|..||:.:..:|..:..|
  Rat  1589 NTYLVHCEGCARRRSAGLQGVV------VLEQYRTEELAQAYDAFTLAPA 1632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynbetaLNP_648836.2 AtpD 103..570 CDD:439825 8/32 (25%)
Kdm6bXP_038942397.1 BepA <90..154 CDD:443813
TPR repeat 106..136 CDD:276809
JmjC 1336..1400 CDD:214721
JmjC 1370..1478 CDD:396791 4/15 (27%)
Blue background indicates that the domain is not in the aligned region.

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