DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13074 and SdicC

DIOPT Version :10

Sequence 1:NP_648835.1 Gene:CG13074 / 39760 FlyBaseID:FBgn0036567 Length:451 Species:Drosophila melanogaster
Sequence 2:NP_001303578.1 Gene:SdicC / 26067076 FlyBaseID:FBgn0283434 Length:544 Species:Drosophila melanogaster


Alignment Length:453 Identity:83/453 - (18%)
Similarity:146/453 - (32%) Gaps:141/453 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 DAATGTQEKLHVATQTEQRVVSSKDVEYDERALAKWLRQICPMVERELMNPTPLMEDLTMSQCRL 105
            |:.....|:.|..       :|...|.||||    |.:..|             :..:..|.   
  Fly   166 DSEEANDERSHAR-------LSLNRVFYDER----WSKNRC-------------ITSMDWST--- 203

  Fly   106 EEKLQVYTYQKLIMGGAENSQGLAIWLCVHTNNAP---VLVATTVAPHDDWCEHVDQQLKLFVPQ 167
                   .:.||::|...|::        .:.|.|   |:|..|             :.|...|:
  Fly   204 -------HFPKLVVGSYHNNE--------ESPNEPDGVVMVWNT-------------KFKKSTPE 240

  Fly   168 RMSVGNLVIYTEAKTLPLKSCLRSLCTNPFNKTMFAGSTMDGELFIWLYEQARGSDSSVDIKQLY 232
                         .....:|.:.|.|...||..:..|.|..|::.:|        |:.|  ::..
  Fly   241 -------------DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLW--------DNRV--QKRT 282

  Fly   233 SVSSTQGAAVALDWP----------REHLLLACFANGSVRQWDLSR----QMALDWEYTLPATVS 283
            .:..|..:|.|...|          ..|.:::..::|.:..|.|..    |..|:.:......::
  Fly   283 PIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIA 347

  Fly   284 SEPTAMVTLGLDDFVVGTNDGGVYRCWNTG----------RQTAAIKQI-----KLLALRRHRFM 333
            ....|.....::..|:|:.||.||.....|          |....|..|     :|.....|.|:
  Fly   348 ITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFL 412

  Fly   334 VSTLLRTEMEGNLFVLSCDL-------SGQAFYHDMRLVDEDMAQLIVQIP-LPFKNVIACSRDG 390
            .|::....::  |.:.||..       |.:..|.     .||.:..::.:. .|....:..:.||
  Fly   413 TSSIKIWSLK--LPISSCQFSVVSGINSNKPLYS-----FEDNSDYMMDVAWSPVHPALFAAVDG 470

  Fly   391 NIIFCPANDGSLEYYRVSDGAHAHVKG-GLRGKGSLIRSSDNGRWLIAGLY---GDEFQIFYV 449
            :        |.|:.:.::......... .:.|..:|.|.|    |..:||:   |||....||
  Fly   471 S--------GRLDLWNLNQDTEVPTASIVVAGAPALNRVS----WTPSGLHVCIGDEAGKLYV 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13074NP_648835.1 None
SdicCNP_001303578.1 Dynein_IC2 21..51 CDD:463291
WD40 196..523 CDD:475233 72/399 (18%)
WD40 repeat 196..245 CDD:293791 12/92 (13%)
WD40 repeat 251..289 CDD:293791 11/47 (23%)
WD40 repeat 298..337 CDD:293791 5/38 (13%)
WD40 repeat 349..386 CDD:293791 8/36 (22%)
WD40 repeat 393..446 CDD:293791 11/59 (19%)
WD40 repeat 452..491 CDD:293791 5/46 (11%)
WD40 repeat 498..522 CDD:293791 11/28 (39%)
Blue background indicates that the domain is not in the aligned region.

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