DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ClC-c and clcn5

DIOPT Version :9

Sequence 1:NP_001261922.1 Gene:ClC-c / 39759 FlyBaseID:FBgn0036566 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001039210.1 Gene:clcn5 / 734069 XenbaseID:XB-GENE-5957241 Length:808 Species:Xenopus tropicalis


Alignment Length:858 Identity:480/858 - (55%)
Similarity:616/858 - (71%) Gaps:82/858 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 TSLTA--AGTDDEDMIDITPRSSPGDVIGGGGGGGSSSGYHRETATESDTERDFGHSGGNGGGNH 122
            :|||:  :.|.||||::|                             ::...||           
 Frog     9 SSLTSFHSSTSDEDMVEI-----------------------------NEATLDF----------- 33

  Fly   123 HNQRTMHQHVPTHSAFGDPMD-----GALSF-----YGSSDVQD--DIPGIGQYEDFHTIDWQRD 175
                ||...||       |:|     |.:|:     :|.|.|.|  |:||:|.||||:||||.|:
 Frog    34 ----TMTDDVP-------PIDRDMAGGFVSYNGNGLHGPSKVMDFLDVPGVGTYEDFNTIDWVRE 87

  Fly   176 IARDRMRHRYIVKKRQDSLWDLIKGSIDAGSGWLCVLLVGIAAGCVAGMVDIGASWMSDLKHGIC 240
            .:|||.|||.|:.|.::|.|.|::...||.|||:.:||:|:.||.:||::||.:.||:|||.|||
 Frog    88 KSRDRDRHREILSKSKESTWALLRSISDAFSGWMLMLLIGLTAGSLAGLIDISSHWMTDLKEGIC 152

  Fly   241 PPAFWFNREQCCYPAKQSVFEE-GNCSTWKTWPEIFGLDRNGTGPYIVAYIWYVLWALLFASLSA 304
            .|.||||.||||:.:....||: .||..|::|.::......|..|||:.|..||||||||:.|:.
 Frog   153 LPWFWFNHEQCCWQSNNVTFEDRNNCPEWRSWSQLVLGRSEGAFPYILNYFMYVLWALLFSLLAV 217

  Fly   305 SLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLLIKSVGLMLSVSAGLTLGKEGPMVHIASC 369
            .|||.|||||||||||||||||||||||||||||||:||::.|:|:||:||:||||||::|:|.|
 Frog   218 LLVRNFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKTMTLVLAVSSGLSLGKEGPLIHVACC 282

  Fly   370 IGNIFSHVFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCA 434
            .|||..|:|.||.:||||:||:|||||||||||||||||||||||||||||||||||||||||.|
 Frog   283 CGNILCHLFTKYRKNEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAA 347

  Fly   435 LIAAFVLRSLTPFGNEHSVLFFVEYNKPWIFFELIPFVFLGIMGGVIGTFFIKANLWWCRYRKFS 499
            |:|||.|||:.||||...|||:||::.||...|||||:.|||.||:.|.|||:.|:.||:.||.:
 Frog   348 LVAAFTLRSINPFGNSRLVLFYVEFHAPWHLLELIPFILLGIFGGLWGAFFIRGNIAWCQRRKTT 412

  Fly   500 KLGQYPVMEVLFVTLVTAIICYPNPFTRMNMNELIFLLVSKCSPGDVTNPLCDY-KRMNITSGNS 563
            |||:|||.|||.||.:||::.:||.:|||:.:|:|..|.:.|...| ::.|||| ...|.|.|.:
 Frog   413 KLGRYPVAEVLVVTAITAVLAFPNDYTRMSSSEMISELFNDCGLLD-SSKLCDYVNDYNNTKGGN 476

  Fly   564 FIEVTEPGPGVYSSIWLLMLTFILKLALTIFTFGMKVPAGLFIPSLLLGAIMGRIVGIGVEQFAY 628
            ..: ...|.|||:::|.|.|..|.|..:||||||||||:||||||:.:||||||::|:.:||.::
 Frog   477 LPD-RAAGNGVYTAMWQLSLALIFKAVITIFTFGMKVPSGLFIPSMAVGAIMGRLLGVAMEQLSF 540

  Fly   629 SYPNIWFFTGEC-ADSNLITPGLYAVVGAAAVLGGVTRMTVSLVVIMFELTGGVRYIVPLMAAAM 692
            .:.:...|.|.| ..::.|||||||:|||||.|||.|||||||||||||||||:.||||||||||
 Frog   541 YHHDWLIFRGWCNQGADCITPGLYAMVGAAACLGGATRMTVSLVVIMFELTGGLEYIVPLMAAAM 605

  Fly   693 ASKWVGDALGRQGIYDAHIALNGYPFLDSKEEFAHTTLAADVMQPKRNE-TLNVITQDSMTVDDV 756
            .||||.|||||:.||||||.|||||||::||||:|.|||.|||:|:||: .|.|||||||||:|:
 Frog   606 TSKWVADALGRESIYDAHIHLNGYPFLEAKEEFSHKTLAMDVMRPRRNDPILTVITQDSMTVEDI 670

  Fly   757 ENLLKETEHNGYPVVVSRENQYLVGFVLRRDLNLAIGNAKRLIEGISSSSIVLFTSSQPIQNLGP 821
            |.::.||.::|:|:|:|||:|.||||||||||.:::.:|::..|||.|:|.:.||...|     |
 Frog   671 EAIINETTYSGFPIVISRESQRLVGFVLRRDLIISVESARKKQEGIVSTSQIYFTEHTP-----P 730

  Fly   822 QP------LKLKKILDMAPITVTDQTPMETVVDMFRKLGLRQTLVTHNGRLLGVITKKDVLRHVK 880
            ||      |||:.|:|::|.|:|||||||.|||:||||||||.||||||||||:|||||||:|:.
 Frog   731 QPPTAPPSLKLRAIMDLSPFTITDQTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIA 795

  Fly   881 QMDNEDPNTVLFN 893
            ||.|:||:::|||
 Frog   796 QMANQDPDSILFN 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-cNP_001261922.1 ClC_3_like 215..719 CDD:239656 316/506 (62%)
Voltage_CLC 298..699 CDD:279048 259/402 (64%)
CBS 738..876 CDD:223591 85/144 (59%)
CBS_pair_EriC_assoc_euk_bac 741..878 CDD:239964 85/143 (59%)
clcn5NP_001039210.1 ClC_3_like 127..632 CDD:239656 316/506 (62%)
CBS_pair_voltage-gated_CLC_euk_bac 643..793 CDD:341367 93/154 (60%)
CBS repeat 649..744 CDD:341367 49/99 (49%)
CBS repeat 750..792 CDD:341367 35/41 (85%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 544 1.000 Domainoid score I261
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 942 1.000 Inparanoid score I340
OMA 1 1.010 - - QHG55339
OrthoDB 1 1.010 - - D116173at33208
OrthoFinder 1 1.000 - - FOG0000220
OrthoInspector 1 1.000 - - otm48457
Panther 1 1.100 - - LDO PTHR45711
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X829
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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