DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ClC-c and clcn7

DIOPT Version :9

Sequence 1:NP_001261922.1 Gene:ClC-c / 39759 FlyBaseID:FBgn0036566 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001071005.1 Gene:clcn7 / 553351 ZFINID:ZDB-GENE-061103-196 Length:795 Species:Danio rerio


Alignment Length:813 Identity:246/813 - (30%)
Similarity:371/813 - (45%) Gaps:175/813 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 FH-----TIDWQRDIA--RDRMRHRYIVKKRQDSLWDLIKGSIDAGSG----------------- 207
            ||     |:|.:.:|.  .|.:|.|.......:.|..|...|:|..:.                 
Zfish    42 FHIGRLSTVDLEEEITPEEDIIRSRPKEIPHNEKLLSLKYESLDYDNSENQLFLEEERRMSQMGF 106

  Fly   208 -------WLCVLLVGIAAGCVAGMVDIGASWMSDLKHGICPPAFWFNREQCCYPAKQSVFEEGNC 265
                   |:...|:|:..|.:|.::||....::.||:               :..||::      
Zfish   107 RCLEITRWVICGLIGLLTGLIACLIDIAVENLAGLKY---------------FAVKQNI------ 150

  Fly   266 STWKTWPEIFGLDRNGTGPYIVAYIWYVLWALL---FASLSASLVRMFAPYACGSGIPEIKTILS 327
               :.:.|:.||.           :..:|||:|   |..:.|.:|..|.|.|.|||||:||..|:
Zfish   151 ---EKFTELGGLS-----------LSLILWAVLNSAFVMVGAIIVAFFEPIAAGSGIPQIKCYLN 201

  Fly   328 GFIIRGYLGKWTLLIKSVGLMLSVSAGLTLGKEGPMVHIASCIGNIFSH-----------VFPKY 381
            |..:...:...||::|..|::.||:.||.:||||||:|..:.:....|.           :| :|
Zfish   202 GVKVPRVVRLKTLVVKVFGVICSVAGGLAVGKEGPMIHSGAVVAAGVSQGRSTSLKKDFKMF-EY 265

  Fly   382 GRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLR---- 442
            .|.:.:||:.:||.||||||.|||||:|||||||||.:.::.....||.||.:::::|.|.    
Zfish   266 FRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQLLTWRIFFASMVSSFTLNFFLS 330

  Fly   443 ------------SLTPFGNEHSVLFFVEYNKPWIFFELIPFVFLGIMGGVIGTFFIKANLWWCRY 495
                        .|..||...|  ..|:||    .:|:..|:.:|.:||::|..|...|.|...:
Zfish   331 IYHQKPGELSSPGLINFGRFDS--DSVQYN----LYEIPLFIIMGALGGMLGALFNLLNYWLTIF 389

  Fly   496 R-KFSKLGQYPVMEVLFVTLVTAIICYPNPFTRMNMNELIFLLVSKCSP--GDVTN--PL---C- 551
            | ::.......|||.:.|..|||.:.:           .:....::|.|  .|.|.  ||   | 
Zfish   390 RIRYIHRPCLQVMEAMLVAAVTATVSF-----------AMIYFSTECQPLGPDHTEEYPLQLFCA 443

  Fly   552 --DYKRMNITSGNSFIEVTEPG--------PGVYSSIWLLMLTFILKLALTIFTFGMKVPAGLFI 606
              :|..|    ..:|....|..        ||.|:.:.|.:.|....| |.::|:|:.|.||:||
Zfish   444 DGEYNAM----ATAFFNTPERSVRSLFHNPPGTYNPMTLGVFTLAYFL-LAVWTYGLTVSAGVFI 503

  Fly   607 PSLLLGAIMGRIVGIGVEQFAYSYPNIWFFTGECADSNLITPGLYAVVGAAAVLGGVTRMTVSLV 671
            ||||:||..||:.|| :..|..:..:||      ||     ||.||::||||.|||:.|||:||.
Zfish   504 PSLLIGAAWGRLFGI-LLSFITTSKSIW------AD-----PGKYALIGAAAQLGGIVRMTLSLT 556

  Fly   672 VIMFELTGGVRYIVPLMAAAMASKWVGDALGRQGIYDAHIALNGYPFLD-SKEEFAHTTLAADVM 735
            ||:.|.||.|.|..|:|...|.:|.|||.. .:|:||.||.|...|||. .....:|...|.:||
Zfish   557 VILVEATGNVTYGFPIMLVLMTAKIVGDYF-VEGLYDIHIKLQSVPFLHWEAPPTSHWLTAREVM 620

  Fly   736 QPKRNETLNVITQDSMTVDDVENLLKETEHNGYPVVVS----RENQYLVGFVLRRDLNLAIGN-- 794
            . .:....|.|.:....||.:.|  ..|.|||:|||..    .|...|.|.|||..|.:.:.:  
Zfish   621 S-SQVTCFNRIEKVGTIVDVLSN--TSTNHNGFPVVTHVTEIDEPSKLCGLVLRSQLIVLLKHKV 682

  Fly   795 -AKRLIEGISSSSIVL------FTSSQPIQNLGPQP------LKLKKILDMAPITVTDQTPMETV 846
             .:|.....|...:.|      :....|||::....      :.|.:.::..|.||..:|.:..|
Zfish   683 FVERAFSRFSQRKLQLKDFRDAYPRFPPIQSIHVSQDERECMMDLTEFMNPTPYTVPQETSLPRV 747

  Fly   847 VDMFRKLGLRQTLVTHN-GRLLGVITKKDVLRH 878
            ..:||.||||..:|..| .|::|::|:||:.|:
Zfish   748 FKLFRALGLRHLVVVDNENRVVGLVTRKDLARY 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-cNP_001261922.1 ClC_3_like 215..719 CDD:239656 181/552 (33%)
Voltage_CLC 298..699 CDD:279048 157/449 (35%)
CBS 738..876 CDD:223591 44/157 (28%)
CBS_pair_EriC_assoc_euk_bac 741..878 CDD:239964 44/156 (28%)
clcn7NP_001071005.1 ClC_6_like 82..604 CDD:239657 186/592 (31%)
Voltage_CLC 172..584 CDD:279048 156/446 (35%)
CBS_pair_EriC_assoc_euk_bac 625..780 CDD:239964 44/156 (28%)
CBS 729..>780 CDD:223591 18/50 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0038
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000220
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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