DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ClC-c and CLCN4

DIOPT Version :9

Sequence 1:NP_001261922.1 Gene:ClC-c / 39759 FlyBaseID:FBgn0036566 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001821.2 Gene:CLCN4 / 1183 HGNCID:2022 Length:760 Species:Homo sapiens


Alignment Length:759 Identity:463/759 - (61%)
Similarity:585/759 - (77%) Gaps:12/759 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 GALSFYGSSDVQD----DIPGIGQYEDFHTIDWQRDIARDRMRHRYIVKKRQDSLWDLIKGSIDA 204
            ||:|  ||.::.|    ..|.:|.|||||||||.|:.:||..|||.|..|.::|:|:.||..:||
Human     5 GAMS--GSGNLMDFLDEPFPDVGTYEDFHTIDWLREKSRDTDRHRKITSKSKESIWEFIKSLLDA 67

  Fly   205 GSGWLCVLLVGIAAGCVAGMVDIGASWMSDLKHGICPPAFWFNREQCCYPAKQSVFEE-GNCSTW 268
            .|||:.:||:|:.||.:||::|:...||:|||.|:|..|||::.||||:.:.::.||: ..|..|
Human    68 WSGWVVMLLIGLLAGTLAGVIDLAVDWMTDLKEGVCLSAFWYSHEQCCWTSNETTFEDRDKCPLW 132

  Fly   269 KTWPEIFGLDRNGTGPYIVAYIWYVLWALLFASLSASLVRMFAPYACGSGIPEIKTILSGFIIRG 333
            :.|.|:......|...||:.|:.|:|||||||.|:.||||:||||||||||||||||||||||||
Human   133 QKWSELLVNQSEGASAYILNYLMYILWALLFAFLAVSLVRVFAPYACGSGIPEIKTILSGFIIRG 197

  Fly   334 YLGKWTLLIKSVGLMLSVSAGLTLGKEGPMVHIASCIGNIFSHVFPKYGRNEAKKREILSAAAAA 398
            ||||||||||:|.|:|.||:||:||||||:||:|.|.||.||.:|.||.:||.|:||:|||||||
Human   198 YLGKWTLLIKTVTLVLVVSSGLSLGKEGPLVHVACCCGNFFSSLFSKYSKNEGKRREVLSAAAAA 262

  Fly   399 GVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSLTPFGNEHSVLFFVEYNKPW 463
            ||||||||||||||||||||||||||||||||||.||:|||.|||:.||||...|||:|||:.||
Human   263 GVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFTLRSINPFGNSRLVLFYVEYHTPW 327

  Fly   464 IFFELIPFVFLGIMGGVIGTFFIKANLWWCRYRKFSKLGQYPVMEVLFVTLVTAIICYPNPFTRM 528
            ...||.||:.||:.||:.||.||:.|:.|||.||.::||:|||:||:.||.:||||.||||:||.
Human   328 YMAELFPFILLGVFGGLWGTLFIRCNIAWCRRRKTTRLGKYPVLEVIVVTAITAIIAYPNPYTRQ 392

  Fly   529 NMNELIFLLVSKCSPGDVTNPLCDY-KRMNITSGNSFIEVTEPGPGVYSSIWLLMLTFILKLALT 592
            :.:|||..|.:.|...: ::.|||| ...|:|.....|.....|.|||:::|.|.|..|.|:.:|
Human   393 STSELISELFNDCGALE-SSQLCDYINDPNMTRPVDDIPDRPAGVGVYTAMWQLALALIFKIVVT 456

  Fly   593 IFTFGMKVPAGLFIPSLLLGAIMGRIVGIGVEQFAYSYPNIWFFTGEC-ADSNLITPGLYAVVGA 656
            |||||||:|:||||||:.:|||.||:|||||||.||.:.:...|...| ..::.:||||||:|||
Human   457 IFTFGMKIPSGLFIPSMAVGAIAGRMVGIGVEQLAYHHHDWIIFRNWCRPGADCVTPGLYAMVGA 521

  Fly   657 AAVLGGVTRMTVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGRQGIYDAHIALNGYPFLDS 721
            ||.|||||||||||||||||||||:.|||||||||:.||||.||.|::|||:|||.||||||||.
Human   522 AACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAFGKEGIYEAHIHLNGYPFLDV 586

  Fly   722 KEEFAHTTLAADVMQPKRNE-TLNVITQDSMTVDDVENLLKETEHNGYPVVVSRENQYLVGFVLR 785
            |:||.|.|||.|||:|:|.| .|:|:|||||||:|||.|:|||::||:||||||:::.|:||..|
Human   587 KDEFTHRTLATDVMRPRRGEPPLSVLTQDSMTVEDVETLIKETDYNGFPVVVSRDSERLIGFAQR 651

  Fly   786 RDLNLAIGNAKRLIEGISSSSIVLFTSSQP-IQNLGPQPLKLKKILDMAPITVTDQTPMETVVDM 849
            |:|.|||.||::..|||.|:||:.||...| :....|.||||::||:::|.||||.||||||||:
Human   652 RELILAIKNARQRQEGIVSNSIMYFTEEPPELPANSPHPLKLRRILNLSPFTVTDHTPMETVVDI 716

  Fly   850 FRKLGLRQTLVTHNGRLLGVITKKDVLRHVKQMDNEDPNTVLFN 893
            ||||||||.|||.:|||||:|||||||||:.||.|:||.:::||
Human   717 FRKLGLRQCLVTRSGRLLGIITKKDVLRHMAQMANQDPESIMFN 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-cNP_001261922.1 ClC_3_like 215..719 CDD:239656 315/506 (62%)
Voltage_CLC 298..699 CDD:279048 266/402 (66%)
CBS 738..876 CDD:223591 87/139 (63%)
CBS_pair_EriC_assoc_euk_bac 741..878 CDD:239964 88/138 (64%)
CLCN4NP_001821.2 Required for localization in the endoplasmic reticulum. /evidence=ECO:0000269|PubMed:17023393 14..63 23/48 (48%)
ClC_3_like 78..584 CDD:239656 315/506 (62%)
Selectivity filter part_1. /evidence=ECO:0000250 180..184 3/3 (100%)
Selectivity filter part_2. /evidence=ECO:0000250 222..226 3/3 (100%)
Selectivity filter part_3. /evidence=ECO:0000250 467..471 3/3 (100%)
CBS_pair_voltage-gated_CLC_euk_bac 595..745 CDD:341367 95/149 (64%)
CBS repeat 601..696 CDD:341367 52/94 (55%)
Required for localization in the endoplasmic reticulum. /evidence=ECO:0000269|PubMed:28972156 667..696 13/28 (46%)
CBS repeat 702..744 CDD:341367 34/41 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155004
Domainoid 1 1.000 544 1.000 Domainoid score I258
eggNOG 1 0.900 - - E1_COG0038
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 966 1.000 Inparanoid score I326
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55339
OrthoDB 1 1.010 - - D116173at33208
OrthoFinder 1 1.000 - - FOG0000220
OrthoInspector 1 1.000 - - otm41248
orthoMCL 1 0.900 - - OOG6_100336
Panther 1 1.100 - - O PTHR45711
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1878
SonicParanoid 1 1.000 - - X829
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.800

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