DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ClC-c and clcnkb

DIOPT Version :9

Sequence 1:NP_001261922.1 Gene:ClC-c / 39759 FlyBaseID:FBgn0036566 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_031755485.1 Gene:clcnkb / 100487225 XenbaseID:XB-GENE-6049695 Length:828 Species:Xenopus tropicalis


Alignment Length:817 Identity:200/817 - (24%)
Similarity:325/817 - (39%) Gaps:252/817 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 GSGWLCVLLVGIAAGCVAGMVDIGAS-------WMSDLKHGICPPAFWFNREQCCYPAKQSVFEE 262
            |..|:.:.|:||:...::..:|:..:       |:.|                            
 Frog    77 GEDWIFLFLLGISMATISFGLDVTIAKLQRANLWVYD---------------------------- 113

  Fly   263 GNCSTWKTWPEIFGLDRNGTGPYIVAYIWYVLWALLFASLSASLVRMFAPYACGSGIPEIKTILS 327
                         .|||.   .|:..:.| ||:.:|....||.:.:..:|.|.||||||||..|.
 Frog   114 -------------ALDRY---RYLQYFSW-VLYHVLLMITSAGMAKYISPQAAGSGIPEIKVTLR 161

  Fly   328 GFIIRGYLGKWTLLIKSVGLMLSVSAGLT--LGKEGPMVHIASCIGNIFSHVFPKY---GRNEAK 387
            |.::..:....|.:.|.:|:..:::||.|  |||.||.||:|:.:......:..|.   ..|.::
 Frog   162 GVVLAEFFTLRTFIAKLIGVTCTLAAGSTIFLGKVGPFVHMATILATQLGRLMVKLVGAKENPSR 226

  Fly   388 KREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSLTPFGNEH- 451
            |.|:|.|.||.||:..|.||:||||||:|..:.:|.::..||.||.|..||.:.|.|.....|. 
 Frog   227 KYEMLVAGAAVGVACCFVAPVGGVLFSVEATATHFAVRNYWRGFFAATCAALMFRLLAVINREKE 291

  Fly   452 --SVLFF----VEYNKPWIFFELIPFVFLGIMGGVIGTFFIKANLWWCRYRKFSK-----LGQYP 505
              ::||.    ||:  |:...|.:.:..||::.|.:          .|.|....:     |..:|
 Frog   292 TVAILFSTNWRVEF--PFDLPEYLSYAILGVVCGCL----------CCVYLFLHRTTLLFLQNHP 344

  Fly   506 VMEVL----------FVTLVTAIICYPNPF------TRMNMNELIFLLVSKCS------------ 542
            .:..|          ||..|.|.|.:|:.|      ||:.|.|.:....:..:            
 Frog   345 RISTLLRNNRMVYAAFVAWVLASITFPHGFGQYLGGTRLTMKEHLETFFNNITWGIEELSLGANI 409

  Fly   543 PGDVTNPLCDYKRMNITSGNSFIEVTEPGPGVYSSIWLLMLTFILKLALTIFTFGMKVPAGLFIP 607
            .|...||         :..|:|::.|.|.   .|::.:|....:||..:.:|...|.:|||.|:|
 Frog   410 SGQPPNP---------SYSNNFLQWTHPN---MSTLEILTCFVVLKFFMLLFANTMIIPAGYFLP 462

  Fly   608 SLLLGAIMGRIVGIGVEQFAYSYPNIWFFTGECADS--NLITPGLYAVVGAAAVLGGVTRMTVSL 670
            ..:.||.:||:.|   |..|..:||     |..::.  ..|||..||:.||||..|.||: |:|.
 Frog   463 VFVYGAGLGRLYG---EIMAKIFPN-----GIVSEGIPIKITPAGYALAGAAAYSGAVTQ-TLST 518

  Fly   671 VVIMFELTGGVRYIVPLMAAAMASKWVGDALG---RQGIYDAHIALNGYPFLDSKEEFAHTTLAA 732
            .:::|||:|.:.:|:|::.|.:    :.:|:.   :...:|..:.:...|:|             
 Frog   519 ALLVFELSGQMSHILPVLIAVL----IANAISQNYQSSFFDLIVIIKKLPYL------------- 566

  Fly   733 DVMQPK----RNETLNVITQDSMTVD-----------DVENLLKETEHNGYPVVVSRENQYLVGF 782
                ||    :|...::..:|.|..|           |:.:|||.:|...:|.|.|.|::.|:|.
 Frog   567 ----PKLAMGQNSAHDICAEDFMVTDLQYLVKGFRYRDIRSLLKSSELKQFPFVDSEESKVLLGC 627

  Fly   783 VLRRDLNLAIGNAKRLIEGISSSSIVLFTSSQ-----PIQNLGPQ-------------------- 822
            ..|:.|      ||.|.|.:|:...:.|...:     ||...|..                    
 Frog   628 FSRKSL------AKLLAEQLSTERRIQFMLDKTGGKFPITPSGENGTDEKTDLHKIEECEYSDTT 686

  Fly   823 -------------------------------------------------PLKLKKILDMAPITVT 838
                                                             ||:|..| |..|..:.
 Frog   687 YSAQETVVYESEEKQKTRTESRRRRSAKFKSHYLKMVEEWECRQLNEEVPLELLTI-DPTPYRLL 750

  Fly   839 DQTPMETVVDMFRKLGLRQTLVTHNGRLLGVITKKDV 875
            ::..:....|:|..||||...||..|||:||::..::
 Frog   751 EKETLYQCYDLFNLLGLRTAYVTRIGRLVGVVSLSEI 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-cNP_001261922.1 ClC_3_like 215..719 CDD:239656 149/560 (27%)
Voltage_CLC 298..699 CDD:279048 134/447 (30%)
CBS 738..876 CDD:223591 46/227 (20%)
CBS_pair_EriC_assoc_euk_bac 741..878 CDD:239964 44/220 (20%)
clcnkbXP_031755485.1 ClC_1_like 79..567 CDD:239655 152/586 (26%)
CBS_pair_voltage-gated_CLC_euk_bac 581..790 CDD:341367 44/214 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000220
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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