DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5235 and Pal1

DIOPT Version :9

Sequence 1:NP_001261921.1 Gene:CG5235 / 39758 FlyBaseID:FBgn0036565 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_001137630.2 Gene:Pal1 / 36033 FlyBaseID:FBgn0283510 Length:541 Species:Drosophila melanogaster


Alignment Length:276 Identity:57/276 - (20%)
Similarity:96/276 - (34%) Gaps:97/276 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 GDYLITDCSYETKYRKRPTFGGYSTKEEMCLTFITYYPKIEMSG-CYSMTPVREFF--------- 526
            ||:.:.|.....:..|      ||.|.|:    |.::.:...|| .|.:.| :.||         
  Fly   239 GDFFVADGYCNARILK------YSRKGEL----ILFWGQNTFSGISYDVAP-QNFFAIPHALTLV 292

  Fly   527 -----------EMFRVYQFYSLNMT---DVENMF----LYNSDYTDYSKQAKNATNKPNSGKTSK 573
                       |..||..|.|.|.|   ...|..    |::..||..:.......|.|.:     
  Fly   293 PELQLLCAADRENGRVQCFLSSNGTFHSQYHNQLIGDRLFSMAYTPAAGGQLVIVNGPTA----- 352

  Fly   574 EDVIYQE----------SLLNKLVIS----DPAEF---HD--------RTFLSHLNQLPWHDPLF 613
            |..|:.|          |:.:|.::|    :..:|   ||        ..:::.||.:..|    
  Fly   353 ELGIHPEHYNEVHGFVLSMRSKQLVSKFGPNNLQFQNPHDVAVTADGNEIYVAELNPMRIH---- 413

  Fly   614 TKRVEQAFITGTHMTFCRVSKDSL--------SIPSEIIRYPEFTAYVKPPAACLNYLFTDNEEL 670
             |.|.::......::..:.|:||.        .:|:..:.:|...|.:   .|.|..||      
  Fly   414 -KFVHRSLAKPMSLSASKDSRDSAISQAVGGDQVPAVAVHHPSGKAIL---VASLMLLF------ 468

  Fly   671 RSGSSQFFTDFTLSLL 686
             :||:     |.|:|:
  Fly   469 -AGST-----FALALI 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5235NP_001261921.1 DOMON 54..174 CDD:281361
Cu2_monooxygen 214..354 CDD:279429
Cu2_monoox_C 374..529 CDD:281675 16/77 (21%)
Pal1NP_001137630.2 NHL_PAL_like 97..416 CDD:271328 41/197 (21%)
NHL repeat 111..172 CDD:271328
NHL repeat 178..220 CDD:271328
NHL repeat 230..267 CDD:271328 9/37 (24%)
NHL repeat 283..321 CDD:271328 8/37 (22%)
NHL repeat 330..382 CDD:271328 11/56 (20%)
NHL repeat 388..415 CDD:271328 5/31 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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