DRSC/TRiP Functional Genomics Resources

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Protein Alignment LHX1 and Lmx1a

DIOPT Version :10

Sequence 1:NP_005559.2 Gene:LHX1 / 3975 HGNCID:6593 Length:406 Species:Homo sapiens
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:338 Identity:109/338 - (32%)
Similarity:148/338 - (43%) Gaps:71/338 - (21%)


- Green bases have known domain annotations that are detailed below.


Human     4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQ 68
            |.||.:.|.||||:||.|..||.:|:.||.|...|...|:.|..|||||.|:.|.||.||:.|..
  Fly   275 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCH 339

Human    69 GISPSDLVRR-ARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHS 132
            .|.|.:||.| ..:.||||.||.|..|...|..||:..:.|...|..:.|......:|...:.|.
  Fly   340 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHC 404

Human   133 ATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNEND-----DQNLGAKRRGPRTTIKAKQL 192
            ...|.|                               |.|     |...|.||  |||.:.::|.
  Fly   405 GFVGLD-------------------------------EEDLLRPRDGRRGPKR--PRTILTSQQR 436

Human   193 ETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSK----ERRMKQLSALG-------A 246
            :..||:|..:|||.|.:||.||::|||::||:||||||:|:|    :|:.||....|       .
  Fly   437 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRG 501

Human   247 RRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPV-- 309
            ..::.....:......|:....||         |...|.|.|          |..|:.|..|:  
  Fly   502 TGNSSATDDKDTNDKEDKCVKQEL---------GGDSSGYLG----------GLDSTFASQPLNP 547

Human   310 DLPFVPSSGPSGT 322
            :|||.|...|:.:
  Fly   548 NLPFSPDDYPANS 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LHX1NP_005559.2 LIM1_Lhx1_Lhx5 4..55 CDD:188753 25/50 (50%)
LIM2_Lhx1_Lhx5 63..118 CDD:188761 20/55 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..187 12/63 (19%)
Homeodomain 181..237 CDD:459649 28/59 (47%)
dnaA <263..>382 CDD:455861 16/62 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 293..374 9/32 (28%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 26/51 (51%)
LIM 333..388 CDD:413332 21/54 (39%)
Homeodomain 425..481 CDD:459649 30/57 (53%)

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