DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DNApol-delta and POL1

DIOPT Version :9

Sequence 1:NP_524099.2 Gene:DNApol-delta / 39746 FlyBaseID:FBgn0263600 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_014297.3 Gene:POL1 / 855621 SGDID:S000005046 Length:1468 Species:Saccharomyces cerevisiae


Alignment Length:1204 Identity:274/1204 - (22%)
Similarity:472/1204 - (39%) Gaps:290/1204 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NPDDDEEMGFEAELAAFENSEDMDQTLLMG---------------DGPENQTTSERWSRPPPP-- 67
            ||...:.:..|      |:.||.|:.:::.               |...|.:||...:.|..|  
Yeast   258 NPPSAQSLADE------EDDEDSDEDIILKRRTMRSVTTTRRVNIDSRSNPSTSPFVTAPGTPIG 316

  Fly    68 --ELDPSKH------------NLE-----------FQQL-----DVENYLGQPLPGMPGAQIGPV 102
              .|.|||.            |::           ||..     :|.|.|               
Yeast   317 IKGLTPSKSLQSNTDVATLAVNVKKEDVVDPETDTFQMFWLDYCEVNNTL--------------- 366

  Fly   103 PVVRMFG-VTMEGN---SVCCHVHGFC-PYFYI----EAPSQFEEHHCEKLQKALDQKVIADIRN 158
               .:|| |.::.:   |....::|.| ..|::    :.|:...|   |.:...:|:..:.:||.
Yeast   367 ---ILFGKVKLKDDNCVSAMVQINGLCRELFFLPREGKTPTDIHE---EIIPLLMDKYGLDNIRA 425

  Fly   159 NKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISVTLPRFVAAASRLLKKEVIMSEIDFQD-CR 222
            ....::.:..:.::           ..:..|:|  |.||.....:||    :.|.|::.... ..
Yeast   426 KPQKMKYSFELPDI-----------PSESDYLK--VLLPYQTPKSSR----DTIPSDLSSDTFYH 473

  Fly   223 AFENNIDFDIRFMVDTDVVGCNWIELPMGHWR-IRNSHSKPLPESRCQIEVDVAFDRFISHEPEG 286
            .|..|.:....|::...::|..|:::....:. |||:       |.|.:||.|       .:|:.
Yeast   474 VFGGNSNIFESFVIQNRIMGPCWLDIKGADFNSIRNA-------SHCAVEVSV-------DKPQN 524

  Fly   287 ---EWSKVAP-FRILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQGERE-PFIRNVFTLNECAP 346
               ..:|..| .|.||..|:..    :.|:.....::.|.....|....: |...|:...:.|..
Yeast   525 ITPTTTKTMPNLRCLSLSIQTL----MNPKENKQEIVSITLSAYRNISLDSPIPENIKPDDLCTL 585

  Fly   347 I---------IGSQVLCHDK----------ETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLN 392
            :         :|...|...|          |..||..:.|.::..|||::.|:.:.|.....|.:
Yeast   586 VRPPQSTSFPLGLAALAKQKLPGRVRLFNNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYLDVLAH 650

  Fly   393 RAAHLKVRNFEYLGRIKNIRSVIKEQMLQSKQMGRRENQYVNF------EGRVPFDLLFVLLRDY 451
            |...|.:..|..:||  .:|....|      :.||..:...:|      .||:..|:...:.:..
Yeast   651 RMHDLNIPTFSSIGR--RLRRTWPE------KFGRGNSNMNHFFISDICSGRLICDIANEMGQSL 707

  Fly   452 --KLRSYTLNAVSYHFLQEQKEDVHHSIITDLQNGDEQ---TRRRLAMY-----CLKDAYLPLRL 506
              |.:|:.|:    ...|...|..|..:..|.||...|   ....:|:.     |:..|.:..|:
Yeast   708 TPKCQSWDLS----EMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTMALQENITNCMISAEVSYRI 768

  Fly   507 LEKLMAIVNYMEMARVTGVPLESLL--TRGQQIKVLSQLLRKAKTKGFIMPSYTSQGSDEQ---- 565
              :|:.:..  ::..:.|......|  ||..:.:.:  ||.:....|||:|......|..|    
Yeast   769 --QLLTLTK--QLTNLAGNAWAQTLGGTRAGRNEYI--LLHEFSRNGFIVPDKEGNRSRAQKQRQ 827

  Fly   566 ---------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKL 615
                           |:|..|.||::|.:.:.:..:||.||||||:...|:|:||:.        
Yeast   828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD-------- 884

  Fly   616 RQQENLQDDQVERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLKVETDPFKRKVLDGRQL 680
            |.:|::  |::...|      .|||.:|:||.:|.:|:..|:..|..:|.||||.||...|.||.
Yeast   885 RNKEDI--DELPSVP------PSEVDQGVLPRLLANLVDRRREVKKVMKTETDPHKRVQCDIRQQ 941

  Fly   681 ALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIYGDT 745
            |||::|||:||..|....:.....::..||..||.::..|:...||         .|.:|:||||
Yeast   942 ALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAES---------MNLLVVYGDT 997

  Fly   746 DSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLYFTRPDTYD 810
            ||||::.|......::::|.....||:.:: ..::::.:.|:...||..||:||.|..    ..|
Yeast   998 DSVMIDTGCDNYADAIKIGLGFKRLVNERY-RLLEIDIDNVFKKLLLHAKKKYAALTV----NLD 1057

  Fly   811 K-------MDCKGIETVRRDNSPLVANLMNSCLQKLLIERDPDGAVAYVKQVIADLL----CNRI 864
            |       ::.||::..||:..||..::....|..:|.::||:.|:..|...:.|:.    .|.|
Yeast  1058 KNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQEVYDYLEDIRIKVETNNI 1122

  Fly   865 DISHLVITKELAKTDYA----AKQAHVELAAKMKKRDPGTAPKLGDRVPYVICAA-----AKNTP 920
            .|....|..:|:|...|    .....|::|.:|:|  .|...|.|..:.:||...     |.:||
Yeast  1123 RIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRK--AGRVVKAGSVITFVITKQDEIDNAADTP 1185

  Fly   921 AYQKAE-----DPLYVLENSVPIDATYYLEQQLSKPLLRIFEPILGDN----AESILL------- 969
            |...||     :.:.:..|::..|..||||:|:..|:.|:.|.|...|    :|::.|       
Yeast  1186 ALSVAERAHALNEVMIKSNNLIPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKKYFR 1250

  Fly   970 ------KGEHTRTRTVVTSKVGGLAGF---MTKKTSCLGCKSLMPKG-------YE---QACLCP 1015
                  .||.......:.:.:..:..|   :|.:.||..|....|.|       |.   ....|.
Yeast  1251 REGGNNNGEDINNLQPLETTITDVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCK 1315

  Fly  1016 HCEPRMSELY---QKEVGAKRELEETFSRLWTEC 1046
            |||...:.|.   |.|...:..:...::. |.:|
Yeast  1316 HCEQLFTPLQLTSQIEHSIRAHISLYYAG-WLQC 1348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-deltaNP_524099.2 PTZ00166 48..1092 CDD:240301 267/1176 (23%)
DNA_polB_delta_exo 288..517 CDD:99820 53/265 (20%)
POLBc_delta 564..960 CDD:99916 128/439 (29%)
zf-C4pol 997..1070 CDD:290959 14/63 (22%)
POL1NP_014297.3 pol2 29..1227 CDD:273159 250/1080 (23%)
zf-DNA_Pol 1269..1463 CDD:401082 17/81 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0417
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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