DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-delta and pole

DIOPT Version :9

Sequence 1:NP_524099.2 Gene:DNApol-delta / 39746 FlyBaseID:FBgn0263600 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_001121995.1 Gene:pole / 553405 ZFINID:ZDB-GENE-070705-557 Length:2284 Species:Danio rerio


Alignment Length:1286 Identity:235/1286 - (18%)
Similarity:402/1286 - (31%) Gaps:465/1286 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SNGHAKKPRNPDDDEEMGFEAELAAFENSEDMDQTLLMGDGPENQTTSERWSRP----------- 64
            ::|..|..|..|.|.:....:.|:|.:..|....|    |..:.:...||...|           
Zfish     5 NSGRYKADRGGDQDNQQDDASALSAVKRLERSQFT----DSMDERFGFERMKEPGEKTGWLINMH 65

  Fly    65 PPPELDPSKHNLEFQQLDVENYLGQPLPGMPGAQIGPVPVVRMFGVTMEGNSVCCHVHGFCPYFY 129
            |...||..|.                          .:..|..:.:..:||.....: .:.||||
Zfish    66 PTEILDDDKR--------------------------MISAVDYYFIQEDGNRFKVAL-PYKPYFY 103

  Fly   130 IEAPSQFEEHHCEKLQKALDQKVIADIRNNKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKIS- 193
            |......|......|.|....||             |.|.....|.|::..:....|:.|||:| 
Zfish   104 IATKKNTEREVISFLSKKFQGKV-------------AKLESVPKEDLDLPNHLVGLKRNYIKLSF 155

  Fly   194 ------VTLPRFVAAASR--------------LLKKEVIMSEIDFQD--------CRAFENNID- 229
                  :.:.|.::.|.|              :|...::...:..:|        ....:|.:| 
Zfish   156 NTVDDLIKVKREISPAVRKNREREKSNDAYTSMLSSALVGGSVVTEDEGGSSKKMTEQLDNILDM 220

  Fly   230 --FDIRFMVDTDVVGCNWIELPMGHW---RIRNSHSKPLPESRCQIEVDVAFDRFISHEPEGEWS 289
              :|:.:.|...:.    :::.:.||   |.|.|...|        |:....|.....:|.    
Zfish   221 REYDVPYHVRVSID----LKIHVAHWYNVRYRGSAYPP--------EIVRRDDLVERPDPV---- 269

  Fly   290 KVAPFRILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQG----ERE--------------PFIR 336
                  :|:||||.......||:|:.|.::.|:.|:..||    .||              |...
Zfish   270 ------VLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGFLITNREIVSEDIEDFEFTPKPEYE 328

  Fly   337 NVFTL-NECAPIIGSQVLCHDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVR 400
            ..||: ||            ..|..::.:|...|.|..|:|...||.:.||:|::..|||.|.: 
Zfish   329 GPFTIFNE------------PDEASLIQRWFEHVHETKPNIFVTYNGDFFDWPFVEARAAQLGL- 380

  Fly   401 NFEYLGRIKNIRSVIKEQMLQSKQMGR-RENQYVNFEGRVPFDLLFVLLRDYKL--RSYTLNAVS 462
                        |:.:|...|....|. :.:|.::      .|.|..:.||..|  .|:.|.|.:
Zfish   381 ------------SMHREIGFQKDNQGEYKASQAIH------MDCLRWVKRDSYLPVGSHNLKAAA 427

  Fly   463 YHFLQEQKEDVHHSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPL 527
            ...|.....::....:..:...:.||   ||.|.:.||.....|   .|..|:....|..|.:|:
Zfish   428 KAKLGYDPVELDPEEMCRMATEEPQT---LATYSVSDAVATYYL---YMKYVHPFIFALCTIIPM 486

  Fly   528 E--SLLTRGQQIKVLSQLLRKAKTKGFIMPS--------YTSQG---SDEQYEGATVIEPKRGYY 579
            |  .:|.:|......:.|:.:|.....:.|:        .|..|   ..|.|.|..|...:.|.:
Zfish   487 EPDEVLRKGSGTLCEALLMVQAYHVNIVFPNKQEQVFNKLTDDGHVLDSETYVGGHVEALESGVF 551

  Fly   580 ADPIST----------------------------------------------------------- 585
            ...|..                                                           
Zfish   552 RSDIPCRFKMNPAAFDFLIQRVERTLRHAIEEEEKIPLEQVTNFNEVCDEIKRKLISLKEVPNRI 616

  Fly   586 -------LDFASLYPSIMMAHNL----------------------CYTTL-------VLGGTREK 614
                   ||..::||:|::.:.|                      |...:       ::..:|.:
Zfish   617 ECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQRRMTWQWRGEIMPASRSE 681

  Fly   615 L-RQQENLQDDQV-----------------------ERTPANNY----FVKSEVRRGLLPEILES 651
            . |.|:.|:.::.                       |:....:|    :.|..:.|      ||.
Zfish   682 FHRIQQQLESEKFPPVFPNGPPRAFHELNREEQARHEKKRLGDYCRKAYKKVHLTR------LEE 740

  Fly   652 LLAARKRAKNDLKVET---------------DPFKRK---------------------VLDGRQL 680
            .:....:.:|...|:|               ..:|:|                     :.:..||
Zfish   741 RVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSTAQDNGDAAEVKRCKNMEILYESLQL 805

  Fly   681 ALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVES------------HYTQANG 733
            |.|...||.||:...:..:...:|::|.|...|..:|...:..:|.            .....|.
Zfish   806 AHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGANIITQARELIEQIGRPLELDTDGIWCVLPNT 870

  Fly   734 YENNAVV---------IYGDTDSVMVNFGVK---TLERSMELGREAAELVSSKFVHPIKLEFEKV 786
            :..|.|:         :.......|:|..||   |..:..||...|:....::..:.|   |.:|
Zfish   871 FPENFVIKSTNEKKPKVTISYPGAMLNIMVKEGFTNHQYQELVDAASLTYETRAENSI---FFEV 932

  Fly   787 YYPYLLI-----------NKKRYAGLYFTRPDTYDKMDCKGIETVRRDNSPLVANLMNSCLQKLL 840
            ..|||.:           .|||||  .|....:..::  ||.|..||....|:....:|..:..|
Zfish   933 DGPYLAMILPASKEEGKKLKKRYA--VFNEDGSLAEL--KGFEVKRRGELQLIKIFQSSVFEAFL 993

  Fly   841 ----IERDPDGAVAYVKQVIADLLCNR------IDISHLV-----ITKELAKTDYA-AKQAHVEL 889
                :| :...:||.|.....|:|.::      .::..|:     ::::|  .||. .|...:..
Zfish   994 KGTTLE-EVYASVAKVADYWLDVLYSKAANMPDAELFELISENRSMSRKL--EDYGEQKSTSIST 1055

  Fly   890 AAKMKKRDPGTAPKLGDRV--------PYVICAAAKNTPAYQKAEDPLYVL--ENSVP------- 937
            |.::       |..|||::        .|||....:.:|..::| .||.:.  |.||.       
Zfish  1056 AKRL-------AEFLGDQMVKDAGLSCRYVISRKPEGSPVTERA-IPLAIFQAEESVKKHFLRKW 1112

  Fly   938 --------------IDATYYLE----------------QQLSKPLLRIFEP 958
                          :|.:||:|                ||:..|:.|:..|
Zfish  1113 LKMPSLHDLDIRSILDWSYYIERLGSAIQKIITIPAALQQVKNPVPRVRHP 1163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-deltaNP_524099.2 PTZ00166 48..1092 CDD:240301 226/1249 (18%)
DNA_polB_delta_exo 288..517 CDD:99820 59/250 (24%)
POLBc_delta 564..960 CDD:99916 108/652 (17%)
zf-C4pol 997..1070 CDD:290959
poleNP_001121995.1 PolB 97..1164 CDD:223494 215/1163 (18%)
DNA_polB_epsilon_exo 267..470 CDD:99822 58/249 (23%)
POLBc_epsilon 530..1152 CDD:99918 104/645 (16%)
DUF1744 1527..1924 CDD:285663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0417
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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