DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl1 and Trim23

DIOPT Version :10

Sequence 1:NP_524098.2 Gene:Arl1 / 39745 FlyBaseID:FBgn0000115 Length:180 Species:Drosophila melanogaster
Sequence 2:XP_008758905.1 Gene:Trim23 / 81002 RGDID:621587 Length:601 Species:Rattus norvegicus


Alignment Length:162 Identity:82/162 - (50%)
Similarity:112/162 - (69%) Gaps:1/162 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCY 80
            |:|::.||||||||||||::|:..|.:..|||||||||.|.||||||.:||:||:..:||.|:.|
  Rat   431 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 495

  Fly    81 YSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLE 145
            |.||.|:::||||:.||||..:..||..:|.|:||..|:|::.|||||:.|.::|.|:...|.|.
  Rat   496 YLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLH 560

  Fly   146 NL-KNRTFQIFKTSATKGEGLDQAMDWLSNTL 176
            .| ..|::.|....|..|.||.:.:||||..|
  Rat   561 KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl1NP_524098.2 Arl1 18..175 CDD:206718 80/157 (51%)
Trim23XP_008758905.1 mRING-HC-C3HC3D_TRIM23_C-IX 55..104 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 150..199 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 201..250 CDD:380832
BBC 253..397 CDD:128778
ARD1 433..601 CDD:206723 81/160 (51%)
Blue background indicates that the domain is not in the aligned region.

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