DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl1 and arf-5

DIOPT Version :9

Sequence 1:NP_524098.2 Gene:Arl1 / 39745 FlyBaseID:FBgn0000115 Length:180 Species:Drosophila melanogaster
Sequence 2:NP_501336.1 Gene:arf-5 / 177595 WormBaseID:WBGene00000183 Length:180 Species:Caenorhabditis elegans


Alignment Length:173 Identity:100/173 - (57%)
Similarity:128/173 - (73%) Gaps:0/173 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VLSYFRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLG 68
            :.|.|..|.|.|::|||::|||.||||||||:|::||:||||||||||||.|.|||:.|.|||:|
 Worm     5 ISSLFNRLFGKRQVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69

  Fly    69 GQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCM 133
            ||..|||.||.|:.||..:|:||||.|::||..|::||..||.|:||..|.|:|.|||||:...|
 Worm    70 GQDKIRPLWRHYFQNTQGLIFVVDSNDKERIEESREELHKMLNEDELRDATLLVFANKQDLPNAM 134

  Fly   134 TVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTL 176
            |.||:...|||.||::|.:.|..|.||:|.||.:.:|||||.|
 Worm   135 TAAELTDKLGLHNLRSRQWYIQATCATQGHGLYEGLDWLSNQL 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl1NP_524098.2 Arl1 18..175 CDD:206718 93/156 (60%)
arf-5NP_501336.1 P-loop_NTPase 1..179 CDD:304359 100/173 (58%)
SAR 15..174 CDD:197556 92/158 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53833
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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