DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl1 and arl-3

DIOPT Version :9

Sequence 1:NP_524098.2 Gene:Arl1 / 39745 FlyBaseID:FBgn0000115 Length:180 Species:Drosophila melanogaster
Sequence 2:NP_497037.1 Gene:arl-3 / 175121 WormBaseID:WBGene00000188 Length:184 Species:Caenorhabditis elegans


Alignment Length:180 Identity:78/180 - (43%)
Similarity:112/180 - (62%) Gaps:4/180 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VLSYFRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQV-TYKNLKFQVWDL 67
            ||..|:...| ||:|||:||||.|||||||.:|...:|....||.||||:.| ...:::..|||:
 Worm     6 VLKSFKSPSG-REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDI 69

  Fly    68 GGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGC 132
            |||.||||||..||.|.|.:|:|:||.|:.|......||..:|.||:|....:::.|||||:...
 Worm    70 GGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTA 134

  Fly   133 MTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQ--SRK 180
            .:..|:...|.|:.|::||:.|...||.|.||::..:.|:::.|:  |:|
 Worm   135 ASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLKPASKK 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl1NP_524098.2 Arl1 18..175 CDD:206718 69/157 (44%)
arl-3NP_497037.1 Arl3 3..177 CDD:206721 75/171 (44%)
Ras 19..175 CDD:278499 69/155 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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