DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl1 and arc-1

DIOPT Version :10

Sequence 1:NP_524098.2 Gene:Arl1 / 39745 FlyBaseID:FBgn0000115 Length:180 Species:Drosophila melanogaster
Sequence 2:NP_496089.3 Gene:arc-1 / 174525 WormBaseID:WBGene00000180 Length:539 Species:Caenorhabditis elegans


Alignment Length:172 Identity:58/172 - (33%)
Similarity:88/172 - (51%) Gaps:27/172 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 EMRILILGLDGAGKTTILYRL---QVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYW 77
            |.|:::|||||||||:|:.||   |:..|:...||||||:|.:.|||.:...||:||...:|..|
 Worm   369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLW 433

  Fly    78 RCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQD-------MDGCMTV 135
            :.||||..||.||:|....:|...:..||..::.:..:....::|..|::|       ||..::.
 Worm   434 KHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRKDGYALNGHMDALLSQ 498

  Fly   136 AEV----HHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLS 173
            .|.    ||             .....|..|.|:||.:|.::
 Worm   499 LEALPFQHH-------------FHCCDAATGSGIDQIIDQIT 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl1NP_524098.2 Arl1 18..175 CDD:206718 57/170 (34%)
arc-1NP_496089.3 mRING-HC-C3HC3D_arc-1-like 3..56 CDD:438486
Bbox2_TRIM23_C-IX_rpt1 104..153 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 156..205 CDD:380832
BBC 208..339 CDD:128778
Arf_Arl 371..526 CDD:206644 57/167 (34%)
Blue background indicates that the domain is not in the aligned region.

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