DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and BRM

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001323760.1 Gene:BRM / 819210 AraportID:AT2G46020 Length:2193 Species:Arabidopsis thaliana


Alignment Length:1574 Identity:452/1574 - (28%)
Similarity:675/1574 - (42%) Gaps:367/1574 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASPSPANSPMPPPQAPS-PMA--PPSQSPAPSPHSPYPHQQPGPLQGPPPPGHPGAYGHPMQHG 62
            ||:...|.......|:|| |::  |.|.|..|..:||:.:....                  ..|
plant   289 MAAQQKAGEGNVASQSPSIPISSQPASSSVVPGENSPHANSASD------------------ISG 335

  Fly    63 PPGQGPPGHHMPPHHQGMIFSKGPHMGMQMP-PTGPNMSPYQTHG----MPPNAPTQPCIVSPGG 122
            ..|.....|.:         |.|.......| ...|.|:|:...|    |.|....||....|.|
plant   336 QSGSAKARHAL---------STGSFASTSSPRMVNPAMNPFSGQGRENPMYPRHLVQPTNGMPSG 391

  Fly   123 PPGGPPPPERSSQENLHALQRAIDSMEEKGLQEDPRY-------------------SQLLAMRAT 168
            .|......|....:...:.::::...|...:|: ||.                   |.|.:.:.|
plant   392 NPLQTSANETPVLDQNASTKKSLGPAEHLQMQQ-PRQLNTPTPNLVAPSDTGPLSNSSLQSGQGT 455

  Fly   169 SKHQHLNG---NQVNLLRTQITAYRLLARNKPISMQMQQALQAAQQQPPPGPPIGPPGAPGGPPP 230
            .:.|..:|   .|:::|:.||.|:|.|.:                            |....||.
plant   456 QQAQQRSGFTKQQLHVLKAQILAFRRLKK----------------------------GEGSLPPE 492

  Fly   231 GSQHAGQPPVPPQQQQQPPPSAGTPP---------------QC--STPPASNPYGPPVPGQK--- 275
            ..|....||:..|.|:|..|:.|...               :|  .:..|::..||....::   
plant   493 LLQAISPPPLELQTQRQISPAIGKVQDRSSDKTGEDQARSLECGKESQAAASSNGPIFSKEEDNV 557

  Fly   276 --MQVAPPPPHMQQGQPLPPQPPQVGGPPPIQQQQ---PPQQQQQQSQPPPPEPHQHQLPNGGKP 335
              .:||....|.|..|.|..:..........:||.   |.:..|.........|......:.|| 
plant   558 GDTEVALTTGHSQLFQNLGKEATSTDVATKEEQQTDVFPVKSDQGADSSTQKNPRSDSTADKGK- 621

  Fly   336 LSMGPSGGQPLIPSSPMQPQVRGTLPGMPPGSQVPQPGGGP-------QRQVPPAGMPMPKPNRI 393
             ::...|.|..:|     ||.....|  |..:...:...||       .|::...|......|..
plant   622 -AVASDGSQSKVP-----PQANSPQP--PKDTASARKYYGPLFDFPFFTRKLDSYGSATANANNN 678

  Fly   394 TTVAKPV-------GLDPITLLQERENRIAARISLRMQELQRLPATMSEDLRLQAAIELRALRVL 451
            .|:|..:       |.:  .|.::|.:.:.....|..:.|:|  ..:..||.|:..||.:.||:.
plant   679 LTLAYDIKDLICEEGAE--FLSKKRTDSLKKINGLLAKNLER--KRIRPDLVLRLQIEEKKLRLS 739

  Fly   452 NFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEKQQKLEAERKR-RQKHLE 515
            :.|.::|.|..:..:...::......|..:..:||         :||..:::.|.:|. |:|.|:
plant   740 DLQSRVREEVDRQQQEIMSMPDRPYRKFVRLCERQ---------RLEMNRQVLANQKAVREKQLK 795

  Fly   516 FLAAVLQHGKDLREFH-RNNKAQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAEDEEGY 579
               .:.|..|.|.|.| ....|:.|| |:.|..:|....||..|.::....:||..|...|.|.|
plant   796 ---TIFQWRKKLLEAHWAIRDARTAR-NRGVAKYHEKMLREFSKRKDDGRNKRMEALKNNDVERY 856

  Fly   580 RK-LIDQKKD------KRLAFL---LSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRLIQFKKEL 634
            |: |::|:.:      :|.|.|   |:||::|:..|...:...|:.|   :.||..........|
plant   857 REMLLEQQTNMPGDAAERYAVLSSFLTQTEDYLHKLGGKITATKNQQ---EVEEAANAAAVAARL 918

  Fly   635 LMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGWDWIDDEEDSCGSN 699
            .      |:.|..:.|.......|.....:.|..:||                    :|:|.   
plant   919 Q------GLSEEEVRAAATCAREEVVIRNRFTEMNAP--------------------KENSS--- 954

  Fly   700 DDHKPKVEEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYRTEEQTYYSIAHTIHEKVVEQ 764
                                             :.|              ||::||.::|.||.|
plant   955 ---------------------------------VNK--------------YYTLAHAVNEVVVRQ 972

  Fly   765 ASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIV 829
            .|::..|||::||:.||:|::|||||.||||||||||||||:|.::|:.|||:.|...||:||||
plant   973 PSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1037

  Fly   830 PLSTLPNWVLEFEKWAPAVGVVSYKGSPQGR-RLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQ 893
            |.:.|.||..|...|.|:|..:.|.|:...| :|...::.|.|||||:||||:::.|::.|:|:.
plant  1038 PNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVD 1102

  Fly   894 WKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTF 958
            |||:||||..|||:....|.:.|: .|....|||||||||||.|.|||:|||.|||.:|.:...|
plant  1103 WKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAF 1166

  Fly   959 EQWFNAPFATTG--EKVE---LNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCD 1018
            ..||..||...|  ..:|   |..|:.:::|.|||::|.||:|||..::||..||.||..:::|.
plant  1167 HDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCR 1231

  Fly  1019 MSALQRVLYKHMQSKGVLLTD-GSEKGKHGKGGA------KALMNTIVQLRKLCNHPFM----FQ 1072
            |||:|..:|..:::.|.|..| ..||.:..|...      :.|.|..::|||.||||.:    |.
plant  1232 MSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFN 1296

  Fly  1073 HIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWR 1137
            ...:.:              |.|..||..:|||||.||:.|.||||||..||:.:.|:|:||.||
plant  1297 DFSKDF--------------LVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1347

  Fly  1138 QFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDL 1202
            :..|.|:||||..|||...:..||...:|.|:||||.||.|.||||||||||||:|.|.||..:.
plant  1348 RLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEE 1412

  Fly  1203 QAQDRAHRIGQRNEVRVLRLMTV----------------NSVE--------ERILAA-------- 1235
            ||..|||||||..||:|:.:..|                .||:        :|.:.:        
plant  1413 QAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNN 1477

  Fly  1236 -ARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEI 1299
             .:||::|.::||.||.|||::|..||:..|:|:||.::..:|..::||....:|.||||||||:
plant  1478 IQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEV 1542

  Fly  1300 EIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEV------------------------ 1340
            |:|.:||.|        ....|.:.:..::|.||.....||                        
plant  1543 ELFDQMDEE--------FDWTEEMTNHEQVPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQ 1599

  Fly  1341 ------ERFHYQYDEDTILGRGSRQRKEVDYTDSLTEKEWLKAI-DDGAEFDEEEEEDDSKRKRR 1398
                  ||           .||..:.|:::|          |.| ||.|.:.||..|:.:.....
plant  1600 PGGPGGER-----------KRGRPKSKKINY----------KEIEDDIAGYSEESSEERNIDSGN 1643

  Fly  1399 KRKNRKEESDDDSL 1412
            :.:....:.|||.|
plant  1644 EEEGDIRQFDDDEL 1657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931 9/32 (28%)
Drf_FH1 251..390 CDD:283903 29/170 (17%)
HSA 501..573 CDD:214727 22/73 (30%)
BRK 649..693 CDD:197800 5/43 (12%)
PHA02934 687..>824 CDD:165245 45/136 (33%)
SNF2_N 776..1071 CDD:278600 142/311 (46%)
DEXDc 793..932 CDD:238005 69/139 (50%)
Helicase_C 1097..1212 CDD:278689 66/114 (58%)
SnAC 1304..1375 CDD:291293 15/100 (15%)
Bromo_SNF2L2 1425..1530 CDD:99947
BRMNP_001323760.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0386
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D685477at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10799
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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