DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and Chd6

DIOPT Version :10

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_775544.2 Gene:Chd6 / 71389 MGIID:1918639 Length:2711 Species:Mus musculus


Alignment Length:1560 Identity:387/1560 - (24%)
Similarity:619/1560 - (39%) Gaps:427/1560 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 EPHQHQLPNGGKPLSMGPSGGQPLIPSSPMQPQVRGTLPGMPPGSQVPQPGGGPQRQVPPAGMPM 387
            ||.:.:...|.|.....|...:.  |..|.:|:          .::.|:....|:......|:..
Mouse   100 EPGEQEGTKGSKDREPKPKRKRE--PKEPKEPR----------RAKEPKRAKEPKETKQKDGVKK 152

  Fly   388 PKPNRITTVAKPVGLDPITLLQERENRIAARISLRMQELQRLPATMSEDLRLQAAIELRALRVLN 452
            |:.:|..:..|          :.:|.|.......|         |.|:    :|:.|.....|..
Mouse   153 PRKHREASGTK----------EGKEKRSCTDYGSR---------TKSK----KASREQGPTPVER 194

  Fly   453 FQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLRE-ARATEKLEKQQKLEAERKRRQKHLEF 516
            .::..|       :.:||:|   :::|........|:. ...:|..:.|::....:.:|:|:.|.
Mouse   195 KKKGKR-------KNETTVE---SLELDHSLPNPSLQSPEEPSESADSQKRRSGRQVKRRKYNED 249

  Fly   517 L--AAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAEDEEG- 578
            |  ..|...|:.:........:.|:....|     ..||...:.:...|||....:.:.|...| 
Mouse   250 LDFKVVDDDGETIAVLGAGRTSALSASTLA-----WQAEEPPEDDANIIEKILASKTVQEVHPGE 309

  Fly   579 -----------YRK----------LIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEE 622
                       ||.          :.:.:||.|:|              |.:|     :.:.|:.
Mouse   310 PPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIA--------------QKIK-----RFRNKQA 355

  Fly   623 EGKRLIQFKKELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNM---HP 684
            :.|.:.....|.|.:.:||.||....||    |..:..||:::|       .:|.:|.::   ..
Mouse   356 QMKHIFTEPDEDLFNPDYIEIDRILEVA----HTKDAETGEEVT-------HYLVKWCSLPYEES 409

  Fly   685 GWDWIDDEEDSCGSNDDHK----PKVEEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYRT 745
            .|: ::::.|.....:...    |:|:.......||..|.:.:                 .|||.
Mouse   410 TWE-LEEDVDPAKVKEFESLQILPEVKHVERPASDAWQKLETS-----------------REYRN 456

  Fly   746 EEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIS 810
            ..:                        |:|||::|:.||:..:.|..|.|||||||||||||:|:
Mouse   457 SNR------------------------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIA 497

  Fly   811 LVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQ----------- 864
            .::.:..| .:.||:|||.||||:.||..||..|.....:| |.||...|:::|           
Mouse   498 FLSEIFVR-GIHGPFLIIAPLSTITNWEREFRTWTEMNAIV-YHGSQISRQMIQQYEMVYRDAQG 560

  Fly   865 NQMRAT-KFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLL 928
            |.:... ||:|::||:|.::.|...|.||.|..:||||.||:||.:|||.:.|....: .:::||
Mouse   561 NPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMAL-EHKVLL 624

  Fly   929 TGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRP 993
            |||||||.:.||::|||||.||.|.|.:.|.:.|.          :|..||.   :::|..:|:|
Mouse   625 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQ---VKKLQSILKP 676

  Fly   994 FLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGV-LLTDGSEKGKHGKGGAKALMNT 1057
            .:|||||.:||..|..|.|.||:.:::.:|:..|:.:..|.. .||.|:  .:|....   |:||
Mouse   677 MMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGA--NQHNMPN---LINT 736

  Fly  1058 IVQLRKLCNHPFMFQHIEEKYCD-----HTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRV 1117
            :::|||.||||::....|||..:     |:..........:.:.:||..|:|::||||.|..|:|
Mouse   737 MMELRKCCNHPYLINGAEEKILEDFRKAHSSEASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKV 801

  Fly  1118 LLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLN 1182
            |:|.||.:|:.|:||||..|::.|.|:||..:...|...:.:|....||.|||||.|||||||:|
Mouse   802 LIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGIN 866

  Fly  1183 LQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVI 1247
            |..|||.:||||||||..|||||.|.|||||...|:|.||:|.||.|..:...|..||.:|:.::
Mouse   867 LTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAIL 931

  Fly  1248 QAGMFDQKSTGSERQQF----LQTILHQDD----NEEEEENEVPDDEMINMMIARSEEEIEI--- 1301
            |.  .::|.:.:..||.    ::.:|.:..    .:||:|.....:|.|:.::.|....|.|   
Mouse   932 QD--INRKGSTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSE 994

  Fly  1302 ---------------------------------FKRMDAERKKEDEEIHPGRERL---------I 1324
                                             ...:|.|...|.|.:...|.|:         .
Mouse   995 GKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEANNEKESLVIDRPRVRKQTKHYNSF 1059

  Fly  1325 DESELPDWLTKDDDEVERFHYQYDEDTILGRGSRQRKEVDYTDSLTEKE---------------W 1374
            :|.||.::...|.|..|             |.:|.|:..|........|               |
Mouse  1060 EEDELMEFSELDSDSDE-------------RPTRSRRLSDRARRYLRAECFRVEKNLLIFGWGRW 1111

  Fly  1375 LKAIDDGA---EFDEEEEE---------------DDSKRKR------------------------ 1397
            ...:..|.   ..:|::.|               .|.|.|.                        
Mouse  1112 KDILTHGRFKWPLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWELITPSKDGQVQTLQNHSGLS 1176

  Fly  1398 ----RKRKNRKEESDDDSLILKRRRRQNLD-----------------KRSKKQMHKIMSAV---- 1437
                |.||.:|.:   :.|:|...:  |.|                 |..|:..:|::..|    
Mouse  1177 APVPRGRKGKKTK---NQLLLPELK--NADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLY 1236

  Fly  1438 -IKHNQDGRTLSEPFMKLPSRQ---RLP--DYYEIIKRPVD------IKKILQRIEDCKYADLNE 1490
             :|....|....:.|...|:|:   .||  ||.||   |||      .|.:|..:....|...|.
Mouse  1237 YLKAEILGEAADKAFEGTPARELDVLLPDIDYVEI---PVDWWDAEADKSLLIGVFKHGYERYNA 1298

  Fly  1491 LEKDFMQLCQNAQIYNEEASLIYLDSIAL-QKVFVGARQRITAAADAAAVAAGDNTGEAHGNGGS 1554
            :..|              .:|.:|:.:.: .:..:.|.|.:|           |.|.:....|..
Mouse  1299 MRAD--------------PALCFLEKVGMPDEKSLSAEQGVT-----------DGTSDIPERGNI 1338

  Fly  1555 DNSDNDDD-------------DGGD--------------DGSDDEEIATTSAAAVKMKL------ 1586
            |..|:.:|             ||.|              ||||.::.....::|:..:|      
Mouse  1339 DKEDSAEDKLDGLQKQTASPSDGSDGIFGEKKDDSQAAQDGSDPDKSPWPVSSALTARLRRLVTI 1403

  Fly  1587 --KLNKSLASAPAT--PTQSSSNVSSGA-ATTSKKQTRRKRSQKKYTISDDDDDDMDXLPLGVIF 1646
              :.|:.....|..  |......|.... ..||:.....|.:||::|..:..|........||::
Mouse  1404 YQRCNRKELCRPEILGPGNQGYWVQEEVFRRTSEMDLINKEAQKRWTRREQADFYRTVSSFGVVY 1468

  Fly  1647  1646
            Mouse  1469  1468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 173..202 CDD:462622
Pro-rich <247..401 CDD:464580 14/77 (18%)
PTZ00121 <477..651 CDD:173412 36/198 (18%)
HSA 501..573 CDD:214727 13/73 (18%)
BRK 650..691 CDD:462196 8/43 (19%)
PLN03142 739..>1368 CDD:215601 239/699 (34%)
Bromo_SNF2L2 1425..1530 CDD:99947 26/121 (21%)
Chd6NP_775544.2 Required for DNA-dependent ATPase activity. /evidence=ECO:0000250 1..746 201/788 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 66..243 30/187 (16%)
PTZ00449 <101..372 CDD:185628 56/339 (17%)
CD1_tandem_CHD5-9_like 287..352 CDD:349315 13/83 (16%)
CD2_tandem_CHD5-9_like 371..429 CDD:349310 14/69 (20%)
PLN03142 459..>984 CDD:215601 217/571 (38%)
DEAD-like_helicase_N 460..681 CDD:475120 97/236 (41%)
DEAH box 597..600 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1318..1389 16/81 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1951..1978
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1997..2059
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2124..2147
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2321..2350
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2373..2419
BRK 2402..2435 CDD:470653
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2550..2602
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2641..2711
Blue background indicates that the domain is not in the aligned region.

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