DRSC/TRiP Functional Genomics Resources

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Protein Alignment brm and CHD8

DIOPT Version :10

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001164100.1 Gene:CHD8 / 57680 HGNCID:20153 Length:2581 Species:Homo sapiens


Alignment Length:1921 Identity:480/1921 - (24%)
Similarity:758/1921 - (39%) Gaps:498/1921 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SPANSPMPPPQAPSPMAPPSQSPAPSPHSPYPHQ---QPGPLQGPPPPGHPGAYGHPMQHGPPGQ 66
            |.|:..:|||:..:|.....:|.||:|.|...|.   ||...:.|..|        .:|...|..
Human    61 SSASELVPPPEETAPTELSKESTAPAPESITLHDYTTQPASQEQPAQP--------VLQTSTPTS 117

  Fly    67 GPPGHHMPPHHQGMIFSKG-PHMGMQMPPTGPNMSPYQTHGMPPNAPTQPCIVSPGGPPGGPPPP 130
            |    .:.......|.|:| |.||:    :...:|.....|.||.  :.|.||....||.     
Human   118 G----LLQVSKSQEILSQGNPFMGV----SATAVSSSSAGGQPPQ--SAPKIVILKAPPS----- 167

  Fly   131 ERSSQENLHALQRAIDSMEEKGLQEDPRYSQLLAMRATSKHQHL-----NGNQVNLLR------- 183
              ||....|.                   :|:.|...||..|.|     ||.:|...:       
Human   168 --SSVTGAHV-------------------AQIQAQGITSTAQPLVAGTANGGKVTFTKVLTGTPL 211

  Fly   184 -------------------TQITAYRLLARNKPISMQMQQALQAAQQQPPPGPPIGPPGAPGGPP 229
                               .|....|::..::|:...:.|.::.:       .|.|.|||.|   
Human   212 RPGVSIVSGNTVLAAKVPGNQAAVQRIVQPSRPVKQLVLQPVKGS-------APAGNPGATG--- 266

  Fly   230 PGSQHAGQPPVPPQQQQQPPPSAGTPPQCS----TPPASNPYG------PPVPG----QKMQVAP 280
                    ||:.|.......|:.|...:.:    .|.:..|.|      ..:||    |..|:|.
Human   267 --------PPLKPAVTLTSTPTQGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQLAA 323

  Fly   281 -PPPHMQQGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQPPPPEPHQHQLPNGGKPLSMGPSGGQ 344
             ......||||......|      :|.|||.|:.|...|||..:|...|           |...|
Human   324 LTQAKNAQGQPAKVVTIQ------LQVQQPQQKIQIVPQPPSSQPQPQQ-----------PPSTQ 371

  Fly   345 PLIPSSPMQPQVRGTLPGMPPGSQ--VP-----QPGGGPQRQVPPAGMPMPK---PNRITTVAKP 399
            |:..||..|.|:.|  ||..||.:  ||     ||..| ..|...:|:.:.|   .:.:..::.|
Human   372 PVTLSSVQQAQIMG--PGQSPGQRLSVPVKVVLQPQAG-SSQGASSGLSVVKVLSASEVAALSSP 433

  Fly   400 ----------VGLDPITLL-----QERENRIAARISLRMQEL--QRLPATMSEDLRLQAAIELRA 447
                      .|::....|     ||:.|||.|....|.:..  |.:|..::||       ||.:
Human   434 ASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNED-------ELPS 491

  Fly   448 LRVLNFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEKQQKLEAERKRRQK 512
            :|        ..|..:..||..:....|..:..|::|..|..:.:...||.....:..::::|..
Human   492 VR--------PEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNT 548

  Fly   513 HLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKE----------- 566
            ..:.....:...:..|| ...:..|..|.|:.|.......:.:.|...:..|:|           
Human   549 SSDNSDVEVMPAQSPRE-DEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEP 612

  Fly   567 ---------------RMRRLMAEDEEGYRKLIDQKKDKRL------AFLLSQTDEYISNLTQMVK 610
                           .|:..:....|....::|:....|:      :...::.:|:.........
Human   613 ILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSY 677

  Fly   611 QHKD----DQMKKKEEEGKRLIQFKKELLMSGEYIGIDEGSIVADM----RV----HVVEQCTGK 663
            .|.:    .|::|.:...::|.:||.::.....:...||.....|.    |:    |.:::..|:
Human   678 LHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGE 742

  Fly   664 KLTGDDAPMLKHLHRWLNM---HPGWDWIDDEEDSCGSNDDHKPKVEEQPTATEDATDKAQATGN 725
                   |::.:|.:|.::   ...|:..:|.::  |...:.|......|........:|.|.  
Human   743 -------PVIYYLVKWCSLPYEDSTWELKEDVDE--GKIREFKRIQSRHPELKRVNRPQASAW-- 796

  Fly   726 DEDAKDLITKAKVE-DDEYRTEEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYN 789
                      .|:| ..||:...|                        |:|||::|:.||:..:.
Human   797 ----------KKLELSHEYKNRNQ------------------------LREYQLEGVNWLLFNWY 827

  Fly   790 NNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYK 854
            |..|.|||||||||||||:|:.:..:.: ..:.||:|:|.||||:.||..||..|. .:..:.|.
Human   828 NRQNCILADEMGLGKTIQSIAFLQEVYN-VGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYH 890

  Fly   855 GSPQGRRLLQNQMR------------ATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKN 907
            ||...|:::|....            |.||:.|:||:|.::.|...|.:|:|:.:||||.||:||
Human   891 GSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKN 955

  Fly   908 HHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEK 972
            .:|||...|. |....:::|||||||||.:.||::||:||.||.|.|.|.|.:.|.         
Human   956 RNCKLLDSLK-HMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG--------- 1010

  Fly   973 VELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGV-L 1036
             :|..||.   :::|..:|:|.:|||||::||..|..|.|.||:.:::.:|:..|:.:..|.. .
Human  1011 -DLKTEEQ---VQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1071

  Fly  1037 LTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKY-------CDHTGGHGVVSGPDLY 1094
            |:.|:     |......|:||:::|||.||||::....|||.       | |...|      |.:
Human  1072 LSKGA-----GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREAC-HIIPH------DFH 1124

  Fly  1095 -----RVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRG 1154
                 |.:||..|:|::||||||..|:||:|.||.:|:.|:||||..|::.|.|:||..:...|.
Human  1125 LQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQ 1189

  Fly  1155 ELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRV 1219
            ..:.:|:...||.|||||.|||||||:||..|||.:||||||||..|||||.|.|||||...|:|
Human  1190 AAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 1254

  Fly  1220 LRLMTVNSVEERILAAARYKLNMDEKVIQ--AGMFDQKSTGSERQQF----LQTILHQDD----N 1274
            .||:|.||.|..:...|..||.:|:.|:|  :|. |...||.  |||    ::.:|.:..    .
Human  1255 YRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR-DGNITGI--QQFSKKEIEDLLRKGAYAAIM 1316

  Fly  1275 EEEEENEVPDDEMINMMIAR--------SEEEIEIFKRMDAERKKEDEEIHPGRERLIDESELPD 1331
            ||::|.....:|.|:.::.|        ||.:...|.:......:...:|     .|.|.:....
Human  1317 EEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDI-----SLDDPNFWQK 1376

  Fly  1332 WLTKDDDEVERFHYQYDEDTILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRK 1396
            |..|.|.:::..:   .::.::....|.||:..:..:|.:       ||..||.:.|.|||.:.:
Human  1377 WAKKADLDMDLLN---SKNNLVIDTPRVRKQTRHFSTLKD-------DDLVEFSDLESEDDERPR 1431

  Fly  1397 RRKR-----------------------------------KNRKEESDDDSL--------ILKRRR 1418
            .|:.                                   |.|..|.|.:::        :|..|.
Human  1432 SRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRG 1496

  Fly  1419 RQNL-------------DKRSKKQMHKIMSAVIKHNQDGRTL-SEPFMKLPS----RQRLPD--- 1462
            .:|:             .|..:.|.|..:|..:...:.|:.: |:....:..    |:..||   
Human  1497 DENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQSTFDIHKADWIRKYNPDTLF 1561

  Fly  1463 ----YYEIIKRPVDIKKILQRIEDCKYADLNELEKDFMQLCQNAQIYNE-----------EASLI 1512
                |.:.:|.  ...|:|.|:....|. ..|:..|..:......|.:|           |....
Human  1562 QDESYKKHLKH--QCNKVLLRVRMLYYL-RQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEVPTT 1623

  Fly  1513 YLDSIALQKVFVGA-----RQRITAAADAA-------------AVAAG----DNTGEAHGNGGSD 1555
            :.||.|.:.:.:|.     .:..|..||.|             |:||.    ||..:.......|
Human  1624 WWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDIVEGVDFD 1688

  Fly  1556 NSDNDDD---------DGGDDGSD----DEEIATTSAAAVKMKLKLNKSLASAPATPTQSSSNV- 1606
            ....|.:         |..|:|..    ||||:.               :....|..||...:: 
Human  1689 KDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEISV---------------IDGDEAQVTQQPGHLF 1738

  Fly  1607 -SSGAATTSK-------KQTRRKRSQKKYTISDDDD 1634
             ..|:|.|::       .|...||.|.|...::..|
Human  1739 WPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGD 1774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 173..202 CDD:462622 7/59 (12%)
Pro-rich <247..401 CDD:464580 47/188 (25%)
PTZ00121 <477..651 CDD:173412 28/209 (13%)
HSA 501..573 CDD:214727 11/97 (11%)
BRK 650..691 CDD:462196 8/51 (16%)
PLN03142 739..>1368 CDD:215601 240/672 (36%)
Bromo_SNF2L2 1425..1530 CDD:99947 23/132 (17%)
CHD8NP_001164100.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..114 17/60 (28%)
PHA03247 <68..280 CDD:223021 57/273 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..283 10/47 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 349..392 18/55 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 429..582 33/168 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 596..615 2/18 (11%)
CD1_tandem_CHD5-9_like 638..703 CDD:349315 9/64 (14%)
CD2_tandem_CHD5-9_like 721..779 CDD:349310 11/66 (17%)
PLN03142 810..>1409 CDD:215601 237/661 (36%)
DEXHc_CHD8 811..1032 CDD:350818 94/236 (40%)
DEAH box. /evidence=ECO:0000255|HAMAP-Rule:MF_03071 948..951 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1692..1712 4/19 (21%)
Interaction with FAM124B. /evidence=ECO:0000255|HAMAP-Rule:MF_03071, ECO:0000269|PubMed:23285124 1789..2302
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1991..2116
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2189..2229
BRK 2310..2354 CDD:197800
BRK 2379..2419 CDD:197800
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2481..2581
Blue background indicates that the domain is not in the aligned region.

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