DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and hells

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001032178.1 Gene:hells / 553328 ZFINID:ZDB-GENE-030131-9923 Length:853 Species:Danio rerio


Alignment Length:920 Identity:298/920 - (32%)
Similarity:461/920 - (50%) Gaps:186/920 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   503 LEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKER 567
            :|.....:.||.|.:..     |::.|..:|.:                 |..:|||:|.:|:.|
Zfish    30 IEETTMEKSKHEEMVIT-----KEMEEEEKNLE-----------------EEGEKKEREMMEEAR 72

  Fly   568 MRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYIS-NLTQMVKQHKDDQMKKKEEEGKRLIQFK 631
            ..|  ..|.:       :.:.|||..||.:::.|.. .||:|.:|.:::::||:..|.|..:..:
Zfish    73 QSR--GNDSQ-------EMRFKRLQHLLEKSNIYSKFLLTKMEQQQQEEKLKKERLEKKAAVLKQ 128

  Fly   632 KELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGWDWIDDEEDSC 696
            |             ||   |.:...||:   ||...:|..:.             |.:..||...
Zfish   129 K-------------GS---DKKTVKVER---KKRGREDYKIA-------------DVMTKEEIMS 161

  Fly   697 GSNDDHKPKVEEQPTATE--DATDKAQATGNDEDAKDLITKAKVEDDEYRTEEQTYYSIAHTIHE 759
            .:.   |||:||:..|:.  :|.|..:.:..:.|.|..:::...|:.:...:.:      .|::.
Zfish   162 KAK---KPKMEEEAQASVKLEAEDIEKLSDTNSDIKGRLSETLRENSKQMLDPE------RTVNG 217

  Fly   760 KVV--EQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVM 822
            :.|  :|..:...|.::.||::|:|||..|:.|.:|||||||||||||||.|:.:. :|..|||:
Zfish   218 QPVPAQQPQLFTGGVMRWYQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIA-MMVEKKVL 281

  Fly   823 GPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRL------LQNQMRATKFNVLLTTYEY 881
            ||:|::.||||||||:.||:::.|.|.|:.|.| ||..||      .|:|.......|::|::|.
Zfish   282 GPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHG-PQKERLDLVKKIRQHQGSLRMCPVVVTSFEI 345

  Fly   882 VIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAP--YRLLLTGTPLQNKLPELWALL 944
            .::|:..|.:..|.|:|:|||||:||.:|:|.|.|.   :.|  .:||||||||||.|.|||:||
Zfish   346 AMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELK---MLPTDNKLLLTGTPLQNNLSELWSLL 407

  Fly   945 NFLLPSIFKSCSTFEQWFNAPFATT-GEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLP 1008
            |||||.:|....:||.||:....|: .|.:..||.|. .|:..||.:|.||||||||.:|..::|
Zfish   408 NFLLPDVFDDLKSFESWFDISTITSDAENIVANEREQ-NILHMLHLILTPFLLRRLKSDVTLEVP 471

  Fly  1009 DKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEK-----------GKHGKGGAKA--------- 1053
            .|.|.::...::..|...|..:.:|.:....|.||           |:..:...|.         
Zfish   472 PKKEIVVYAPLTNKQEAFYMAIVNKTIAKLLGQEKDESAPAPLTPSGRPKRRSRKVVNYTEPNTD 536

  Fly  1054 ---------------------------------------LMNTIVQLRKLCNHPFMFQHIEEKYC 1079
                                                   |.|.::.|::.|||.::.::    ..
Zfish   537 SMKDLEKYLEKVQQELDSQASSTPVVNVFMPVDAQVNLKLQNILMLLKRCCNHAYLIEY----PL 597

  Fly  1080 DHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRL 1144
            |.|.|...:. ..|...||||.:|||:||:||...|:||:|.|||..:.|:.||...|.:.|.||
Zfish   598 DPTTGDFKID-EQLVEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRL 661

  Fly  1145 DGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAH 1209
            ||:....||.|.::||:: ..:||:|||||||||||:||.:||||:||||||||..|||||||.|
Zfish   662 DGSMSYADRDENMKKFSS-DPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCH 725

  Fly  1210 RIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQF--------LQ 1266
            ||||...|.|.||:|.|:::|:||..|..|..:::.||....|  |.:.:|.:|.        |.
Zfish   726 RIGQTKPVVVHRLITANTIDEKILERASAKRKLEKMVIHKNKF--KGSKAELKQSKSCLDVDELV 788

  Fly  1267 TILHQDDNE---EEEENEVPDDEMINMMIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESE 1328
            .:|...|.:   :..:.:|..|:.:.:::.||:       .||..:|:..:| ..|..::|:   
Zfish   789 ELLKSRDYDGAVKGTKGKVISDKDLQILLDRSD-------LMDQAKKRVKQE-KDGVFKVIE--- 842

  Fly  1329 LPDWLTKDDD 1338
                 .|||:
Zfish   843 -----AKDDN 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727 15/69 (22%)
BRK 649..693 CDD:197800 7/43 (16%)
PHA02934 687..>824 CDD:165245 46/140 (33%)
SNF2_N 776..1071 CDD:278600 133/362 (37%)
DEXDc 793..932 CDD:238005 69/146 (47%)
Helicase_C 1097..1212 CDD:278689 68/114 (60%)
SnAC 1304..1375 CDD:291293 9/35 (26%)
Bromo_SNF2L2 1425..1530 CDD:99947
hellsNP_001032178.1 nuclear localization signal 140..145 2/7 (29%)
SNF2_N 236..510 CDD:278600 125/279 (45%)
conserved domain I 241..265 16/23 (70%)
DEXDc 253..395 CDD:238005 69/146 (47%)
conserved domain Ia 285..294 5/8 (63%)
conserved domain II 353..371 9/17 (53%)
leucine zipper motif 389..410 17/20 (85%)
conserved domain III 390..397 6/6 (100%)
conserved domain IV 456..466 8/9 (89%)
Shugoshin_C 518..>534 CDD:284886 2/15 (13%)
conserved domain IVa 580..592 4/11 (36%)
SrmB <605..832 CDD:223587 99/237 (42%)
Helicase_C 614..728 CDD:278689 68/114 (60%)
conserved domain IVb 631..642 6/10 (60%)
conserved domain V 688..701 11/12 (92%)
conserved domain VI 719..729 8/9 (89%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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