DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and dom

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_001286676.1 Gene:dom / 45655 FlyBaseID:FBgn0020306 Length:3233 Species:Drosophila melanogaster


Alignment Length:1834 Identity:395/1834 - (21%)
Similarity:616/1834 - (33%) Gaps:757/1834 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 ISMQMQQA-LQAAQQQPPPGPPIGPPGAPGGPPPGSQHA---GQPPVPPQQQQQPPPSAGTPPQC 258
            ||.::..| :|..||...||.|:           |.:|.   ||.|.||                
  Fly   376 ISTKLPAAVVQLTQQGHIPGRPL-----------GGRHGMVFGQIPAPP---------------- 413

  Fly   259 STPPASNPYGPPVPGQKMQVAPPPPHMQQGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQ----- 318
              ....||..|.|||              |.||.|.....|.    ...:.||.|...|.     
  Fly   414 --AAVGNPSVPLVPG--------------GTPLLPCNTSAGS----TALRRPQGQNNASSGSAAA 458

  Fly   319 -------PPPPEPHQHQLPNGGKPLSMGPSGGQPLIPSSPMQPQVRGTLPGMPPGSQVPQP--GG 374
                   .|.|      |..|..|.::|.||               |..||.|....:..|  ||
  Fly   459 SGGGGSLTPTP------LYTGNGPAALGGSG---------------GLTPGTPTSGSLLSPALGG 502

  Fly   375 GPQRQVPPAGMPMPKPNRITTVAKPVGLDPITLLQ-----ERENRIAARISLRMQELQRLPATMS 434
            |       :|.|.......:..||    ..:.::|     :||.....|...::||..|..|.. 
  Fly   503 G-------SGTPNSAAQEFSFKAK----QEVYVMQRISELQREGLWTERRLPKLQEPSRPKAHW- 555

  Fly   435 EDLRLQAAIELRALRVLNFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEK 499
             |..|:..:.|.|    :|.::.:.      :::...:.|..::.|.:.|      |.|.::.||
  Fly   556 -DYLLEEMVWLAA----DFAQERKW------KKNAAKKCAKMVQKYFQDK------ATAAQRAEK 603

  Fly   500 QQKLEAER------------------------------KRRQ---KHLEFLAAVLQHGKDLREFH 531
            .|:|:.:|                              ||:|   :||.|:         :.:..
  Fly   604 AQELQLKRVASFIAREVKSFWSNVEKLVEYKHQTKIEEKRKQALDQHLSFI---------VDQTE 659

  Fly   532 RNNKAQLARMNKAVMNHHA-NAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKR----- 590
            :.::..:..|||:|.:..: |:.|....::|..:..|......:|||...|..:...|.:     
  Fly   660 KFSQQLVEGMNKSVADTPSLNSSRLTSPKRESDDDFRPESGSEDDEETIAKAEEDAADVKEEVTA 724

  Fly   591 LA---------FLLSQTDEYISNLTQMVKQHKDDQMK-------------------------KKE 621
            ||         ||......|:.|..:::|:.:...:|                         .|:
  Fly   725 LAKESEMDFDDFLNDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKEASDDDENTISKQ 789

  Fly   622 EEGKRLIQFKKELLMSGEYIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGW 686
            ||.::.|..|||         |||.....|:.   |||... |...:..|..|. .:.....|..
  Fly   790 EEAEQEIDHKKE---------IDELEADNDLS---VEQLLA-KYKSEQPPSPKR-RKLAPRDPEL 840

  Fly   687 DWIDDEE--DSCGSNDDHKPKVEEQPTATEDATDKAQATGNDEDAKDLITKAKV----------- 738
            |..||..  ||...::|...:.||..:..:..||..:....::..|.|:..|..           
  Fly   841 DSDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQDEQEDGLKSLMADADATSGAAGSGSTA 905

  Fly   739 -----EDDEYRTEEQTYYSIAHTIHEK--------VVEQASIMVNGTLKEYQIKGLEWLVSLYNN 790
                 :||......    ::|.::..|        ||.....::..:|:|||..||:|||::...
  Fly   906 GASGNKDDMLNDAA----ALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLVTMNER 966

  Fly   791 NLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKG 855
            .||||||||||||||||||:|:.:|...|...||:||:||.|.:.||.:||:||.|...:::|.|
  Fly   967 KLNGILADEMGLGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYG 1031

  Fly   856 SPQGRRLLQ-NQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTH 919
            |.:.|:|.: ...:...|:|.:|:|:.|::|:....:.:|||:|:||...:||...:..|:| .:
  Fly  1032 SQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLL-LN 1095

  Fly   920 YIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILII 984
            :....|||||||||||.|.|||:|::||:|.:|.|...|::||:.|.  || .:|.|.|....:|
  Fly  1096 FSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPM--TG-MIEGNMEYNETLI 1157

  Fly   985 RRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKG----VLLTDGSEKGK 1045
            .|||||:|||||||||||||.|:|.|.|::|.|.:|..||.||:...|:.    .|.|       
  Fly  1158 TRLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQT------- 1215

  Fly  1046 HGKGGAKALMNTIVQLRKLCNHPFMFQ-------------------------------------- 1072
               |...:::|.::||||:||||.||:                                      
  Fly  1216 ---GNLLSVINVLMQLRKVCNHPNMFEARPTISPFQMDGITFHTPRLVCDIMEYDPFTQINLETL 1277

  Fly  1073 -----HIEE------------------------------------KYCDH--------------- 1081
                 |:|:                                    ||..|               
  Fly  1278 NLLLLHLEQTMTAYVSHKSRLLAPPRKLIEDIDTAPLPAPRCPNGKYRFHIRVRSAELAQRIKLN 1342

  Fly  1082 ----------------------------------------------------------------- 1081
                                                                             
  Fly  1343 AVKVGASPAMRLEGSKIMPMRNLLPSGRVLKRVSASINPVNMALKPVVINSVVTTTSSSTTASSP 1407

  Fly  1082 ----------------------------------------------------------------- 1081
                                                                             
  Fly  1408 TGALSVLSNSKLLGARSQINAPTPAKVAKTMQDGKPFFYLTPATNSGAAGARLTLTSKTTASAST 1472

  Fly  1082 -----------TGGHGVVSGP--------------------------------DLYRVS------ 1097
                       |.|..::..|                                |.|:|.      
  Fly  1473 TTSRTTVTASTTSGQQLIRDPIVKDLATHVKSTVQKQSIANGKTEPEEETEAEDPYKVQELIQMR 1537

  Fly  1098 ----------------------------------------------------------------- 1097
                                                                             
  Fly  1538 KEQRLAALKRMAMINRRRTDATPIYGEDCREAIQRCMQATRSLKRSTWQTRGYANCCTAMAHRNG 1602

  Fly  1098 ----------------------------------------------------------------- 1097
                                                                             
  Fly  1603 WSLNHLLKSFEERCADLKPVFANFVIYVPSVCAPRIRRYVQNLSSTHWQHEQRIENIVDQALRPK 1667

  Fly  1098 -------------------------GKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWR 1137
                                     ||.:.:||:|.:||...||||:|.|||:.:.::|.:|.:.
  Fly  1668 LALLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYH 1732

  Fly  1138 QFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDL 1202
            ...||||||:|:.|.|..|:.:||. ...:|.|:||||:||:|:||..||||:.:||||||..|.
  Fly  1733 GHIYLRLDGSTRVEQRQILMERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDA 1796

  Fly  1203 QAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQT 1267
            |||||.|||||..:|.:.||::..::|..||..|..|..:.:..|:.|.|......|...:.|.|
  Fly  1797 QAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFT 1861

  Fly  1268 ILHQDDNEEEEENEVPDDEMI-------------------------NMMIARSEEEIEIFKRMDA 1307
            :...:.:|..:|.....|.::                         .:..|..|::::..|...|
  Fly  1862 MEQSEQDESSQEKSENKDRIVATTTLSDTPSTVVETEKQSLRAFEHALAAAEDEQDVQATKTAKA 1926

  Fly  1308 E-------------RKKEDEEIHPGRERLIDESELP-DWLTKDDDEVERFHYQYDEDTILGRGSR 1358
            |             ...||.....|.:..:.:::|. ..|.|....:||:..::           
  Fly  1927 EVAADLAEFDENIPIATEDPNAEGGPQVELSKADLEMQNLVKQLSPIERYAMRF----------- 1980

  Fly  1359 QRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRRKRKNR---KEESDDDSLILKRRRRQ 1420
                |:.|.:....|.|:|.:  ||.:.::.|.::.|.....|..   |:|::.:.::...|:..
  Fly  1981 ----VEETGAAWTAEQLRAAE--AELEAQKREWEANRLAAMHKEEELLKQETEAEEMLTYSRKDS 2039

  Fly  1421 N----LDKRSKKQM 1430
            :    :.:.:.:||
  Fly  2040 SNQVWISRNTMEQM 2053

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931 2/3 (67%)
Drf_FH1 251..390 CDD:283903 33/152 (22%)
HSA 501..573 CDD:214727 17/105 (16%)
BRK 649..693 CDD:197800 11/43 (26%)
PHA02934 687..>824 CDD:165245 49/162 (30%)
SNF2_N 776..1071 CDD:278600 136/299 (45%)
DEXDc 793..932 CDD:238005 61/139 (44%)
Helicase_C 1097..1212 CDD:278689 58/275 (21%)
SnAC 1304..1375 CDD:291293 13/84 (15%)
Bromo_SNF2L2 1425..1530 CDD:99947 2/6 (33%)
domNP_001286676.1 HSA 543..614 CDD:214727 19/88 (22%)
ASF1_hist_chap <674..831 CDD:304562 34/170 (20%)
FAM176 <824..>868 CDD:291517 11/44 (25%)
SNF2_N 952..1238 CDD:278600 136/299 (45%)
DEXDc 969..1108 CDD:238005 61/139 (44%)
Helicase_C 1692..1806 CDD:278689 58/114 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467168
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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