DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brm and XNP

DIOPT Version :9

Sequence 1:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster
Sequence 2:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster


Alignment Length:1300 Identity:289/1300 - (22%)
Similarity:477/1300 - (36%) Gaps:414/1300 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 QQQPPQQQQQQSQPPPPEPHQHQLPNGGKPLSMGPSGGQPLIPSS---------------PMQPQ 355
            :..||:...:||:     .|::...:|...:|......|.:..||               |::  
  Fly    43 ESSPPRSNTKQSR-----THKNVKASGKATVSSSSDSDQAVANSSANDEEKEPVCKIRIVPLE-- 100

  Fly   356 VRGTLPGMPPGSQVPQPGGGPQRQV---------PPAGMPMPKPNRIT--TVAKPVGLDPITLLQ 409
               .|...|...:.|. .|..|:.|         |..|..:..|.|.:  ..|..:.|.....:.
  Fly   101 ---KLLASPKTKERPS-RGSQQKNVTINDSSDEEPLKGSKLVLPARKSRNKNASIIELSDSEEVD 161

  Fly   410 ERENRIAARISLRMQELQRLPATMSE-------DLRLQAAIE-----LRALRVLNFQRQLRMEFV 462
            |.|..:...|.|..:..|..|...|.       :.|.:|..|     .||:|.:|..|:..:...
  Fly   162 EEEESLLVAIPLPKEAQQTKPEKNSSKASKESIEKRQKAQKEATTSSARAIRSVNGTRRGSLSSE 226

  Fly   463 QCTRRDTT-LETALNIK-LYKRTKRQGLREARATEKLEK-----QQKLEAERKRRQKHLEFLAAV 520
            :.:|..:: .|:....| ...|.||..|.:.:..:|.:|     ::.....:|.||         
  Fly   227 RSSRASSSRAESPPRPKRCVVRLKRVSLPKTKPAQKPKKMSSDSEEAATTSKKSRQ--------- 282

  Fly   521 LQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQ 585
                       |.:|::    ::|..::.|.|..|:::|:.:...:......:.|.|    ::.|
  Fly   283 -----------RRSKSE----SEADSDYEAPAAEEEEEEERKSSGDEEEAANSSDSE----VMPQ 328

  Fly   586 KKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGIDEGSIVA 650
            :|.:|..   |::|:..|:.        :.:.|:|::..||:   ||  ..|||           
  Fly   329 RKRRRKK---SESDKGSSDF--------EPEEKQKKKGRKRI---KK--TSSGE----------- 366

  Fly   651 DMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGWDWIDDEEDSCGSNDDHKPKVEEQP----T 711
                                                        |.|..||.|.|.:.:.    .
  Fly   367 --------------------------------------------SDGDGDDDKQKNKRKHIRKII 387

  Fly   712 ATEDATDKAQATGNDEDAKDLITK--AKVEDDEYR--TEEQTYY------SIAHTIHEKVVE--- 763
            .|:|.              ||.||  ||.|||..:  .:.|..|      |.:..|:|.|::   
  Fly   388 KTKDL--------------DLTTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESVEINELVLDFDE 438

  Fly   764 ---QASIMVN-GTLKE---YQIKGLEWLVSLYNNNLNG---------ILADEMGLGKTIQTISLV 812
               :|.:.|: |.||:   :|:.|::::.......|..         |||..||||||:|.::|.
  Fly   439 ESKKALLQVDKGLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVVTLS 503

  Fly   813 TYLM--DRKKVMGPYLIIVPLSTLPNWVLEFEKW--------APAVGVVSYKGSPQGRRLLQNQM 867
            ..|:  .|:..:...|||.||||:.||..||..|        .....:..||..|         .
  Fly   504 HTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKP---------T 559

  Fly   868 RATKFN-------VLLTTYE-YVI----KDKAVLAKIQWKYM-----------IIDEGHRMKNHH 909
            |..|.|       |.:..|: |.|    |.|.:..|.:.:.|           :.||||.:||..
  Fly   560 RIFKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEK 624

  Fly   910 CKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNA---PFATTGE 971
            ..:::.: |......|::||||||||.|.|.:.::.|:.|::.   .|::::.|.   |. |.|:
  Fly   625 TSISKAV-TRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLL---GTYKEYMNRFVNPI-TNGQ 684

  Fly   972 KVELNEEETILIIRR---LHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLY-----K 1028
            ..:..|.:..|:..|   |||:|...:.||....:...||.|.||::...:|.||:.||     .
  Fly   685 YTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTT 749

  Fly  1029 HMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQ-----------------HIEE 1076
            |.:..|     |...||    ||: |......||::..||...:                 .:|.
  Fly   750 HREQSG-----GDVVGK----GAR-LFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDMEG 804

  Fly  1077 KYCDHT----------------------------------------------------------G 1083
            ..||.|                                                          |
  Fly   805 FICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRNGNAGGGDSDSDLEMLGGLGG 869

  Fly  1084 GHGV------------VSGPDLYRV--SGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYL 1134
            |..|            |...:|..|  |.|..:|.|:|.:.:|...::|:|.|..|.:.:||.:|
  Fly   870 GSSVQKDDPSEWWKPFVEERELNNVHHSPKLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFL 934

  Fly  1135 G---------------------WRQ-FGYLRLDGTTKAEDRGELLRKFN------AKGSDVFVFL 1171
            .                     |.. ..|.||||:...|.|..:.::||      |:     :||
  Fly   935 SLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRAR-----LFL 994

  Fly  1172 LSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAA 1236
            :||||||||:||..|:.|||||..|||..|.|:..|.:|.||.....:.||:.:.::|:::    
  Fly   995 ISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKV---- 1055

  Fly  1237 RYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENE---VPDDEMINMMIARSEEE 1298
             |:..:.::.....:.|::.......|.....|:..:.:...|.|   :|.|.:...::  :|.|
  Fly  1056 -YERQVAKQATAKRVIDEQQISRHYNQTDLMELYSYELKPSTEREMPILPKDRLFAEIL--TEHE 1117

  Fly  1299 IEIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDE---VERFHY-QYDEDT----ILGR 1355
            ..|||..:.:...|.||    .|.|.:|.....|...:.::   |:...| .||.:.    ::|:
  Fly  1118 KLIFKYHEHDSLLEQEE----HENLTEEERKSAWAEYEAEKTRTVQASQYMSYDRNAFGNQVMGQ 1178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903 19/107 (18%)
HSA 501..573 CDD:214727 10/71 (14%)
BRK 649..693 CDD:197800 0/43 (0%)
PHA02934 687..>824 CDD:165245 44/171 (26%)
SNF2_N 776..1071 CDD:278600 98/347 (28%)
DEXDc 793..932 CDD:238005 50/180 (28%)
Helicase_C 1097..1212 CDD:278689 49/142 (35%)
SnAC 1304..1375 CDD:291293 12/59 (20%)
Bromo_SNF2L2 1425..1530 CDD:99947
XNPNP_651398.1 DTHCT 258..335 CDD:285332 17/104 (16%)
SNF2_N 458..779 CDD:278600 96/344 (28%)
DEXDc 483..646 CDD:238005 50/172 (29%)
Helicase_C 913..1035 CDD:278689 43/126 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467186
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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